Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06460	PS417_06465	PS417_06470	PS417_06475	PS417_06480
motility	inner cut, LB soft agar motility assay	-0.4	-1.1	-0.4	N.D.	-0.4
motility	inner cut, LB soft agar motility assay	-0.2	-0.0	-0.3	N.D.	-1.3
soil	soil sample 5; outgrowth in LB	+0.5	-0.9	+0.0	N.D.	-1.0
root	root sample 6; outgrowth in LB	+0.4	-0.1	-0.5	N.D.	-1.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	-0.7	-0.5	N.D.	-0.7
soil	soil sample 4; outgrowth in LB	+0.5	-0.9	-0.4	N.D.	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-1.2	-0.1	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-1.1	-0.1	N.D.	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.3	-0.7	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.7	+0.3	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.4	+0.2	N.D.	-0.3
phage	P. simiae ORA MOI 0.1	+0.2	-0.6	-0.4	N.D.	+0.4
liquid stress	Fraxetin 2 mM; liquid stress	-0.2	-0.5	-0.3	N.D.	+0.6
carbon source	2-Deoxy-D-Ribose (C)	+0.0	-0.9	+0.0	N.D.	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.5	-0.9	-0.0	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.7	+0.6	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	+0.2	N.D.	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.7	+0.2	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.5	+0.5	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.6	+0.1	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	+0.8	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.4	+0.7	N.D.	+0.3
supernatant control	Vogels_fungal_media 0.1X	-0.0	+0.9	-0.3	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.7	-0.1	N.D.	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.5	+0.2	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+1.6	+0.1	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.6	+0.1	N.D.	+0.4
stress	methylglyoxal 0.032 vol%	-0.2	+1.0	+0.0	N.D.	+0.6
phage	P. simiae OR Antrim MOI 10	+0.1	+1.1	-0.0	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+1.5	+0.3	N.D.	+0.8