Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00630 and PS417_00635 are separated by 1 nucleotidesPS417_00635 and PS417_00640 are separated by 11 nucleotidesPS417_00640 and PS417_00645 are separated by 99 nucleotidesPS417_00645 and PS417_00650 are separated by 52 nucleotides PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180 _00630 PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033 _00635 PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893 _00640 PS417_00645: PS417_00645 - hypothetical protein, at 131,993 to 132,619 _00645 PS417_00650: PS417_00650 - LysR family transcriptional regulator, at 132,672 to 133,592 _00650
Group Condition PS417_00630 PS417_00635 PS417_00640 PS417_00645 PS417_00650
phage P. simiae Grant Run MOI 0.1 -1.6 -1.2 -0.0 +0.1 -2.3
soil soil sample 3; outgrowth in LB +0.1 -0.4 -0.5 +0.2 -4.3
liquid stress Fraxetin 3 mM; liquid stress +0.1 -0.0 +0.1 +0.0 -4.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.1 -0.1 -0.5 +0.1 -4.3
liquid stress Fraxetin 3 mM; liquid stress +0.3 +0.0 +0.1 -0.1 -4.9
phage P. simiae OR Antrim MOI 0.1 -1.5 -0.5 -0.3 +0.0 -2.2
liquid stress Fraxetin 3 mM; liquid stress +0.2 +0.1 +0.1 +0.3 -4.9
solid stress Fraxetin 2 mM; solid stress +0.4 +0.4 -0.2 +0.2 -5.0
liquid stress Fraxetin 3 mM; liquid stress +0.2 +0.3 +0.2 +0.2 -4.9
phage P. simiae Grant Run MOI 10 -1.7 -1.2 -0.0 -0.0 -1.1
solid stress Fraxetin 3 mM; solid stress +0.3 +0.4 +0.1 +0.0 -4.9
solid stress Fraxetin 3 mM; solid stress +0.6 +0.3 +0.0 +0.2 -5.1
liquid stress Fraxetin 3 mM; liquid stress +0.2 +0.3 +0.0 +0.4 -4.9
phage P. simiae Grant Run MOI 10 -2.2 -1.2 -0.2 +0.5 -1.0
phage JP1 MOI 1 -2.1 -1.4 +0.0 -0.3 -0.1
phage P. simiae OR Antrim MOI 10 -1.8 -0.8 +0.0 -0.6 -0.6
liquid stress Fraxetin 2 mM; liquid stress +0.4 +0.4 -0.1 +0.1 -4.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.9 +0.1 +0.0 -2.0
solid stress Fraxetin 2 mM; solid stress +0.1 +0.4 +0.1 +0.1 -4.1
liquid stress Fraxetin 2 mM; liquid stress +0.4 +0.4 +0.1 +0.0 -4.4
phage JP1 MOI 1 -1.7 -0.6 -0.2 +0.4 -1.1
solid stress Fraxetin 2 mM; solid stress +0.6 +0.1 +0.0 -0.0 -3.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.5 -0.0 +0.1 +0.3 -3.4
solid stress Fraxetin 2 mM; solid stress +0.3 +0.2 +0.1 +0.2 -3.1
solid stress Fraxetin 3 mM; solid stress +1.0 +0.5 -0.1 +0.5 -4.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 +0.5 +0.1 +0.3 -3.2
liquid stress Fraxetin 2 mM; liquid stress +0.3 +0.4 -0.1 +0.2 -2.8
seeds Growth on radish seeds for 72 hours +0.1 +0.5 +0.2 +0.5 -2.5
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +0.7 +0.1 +0.3 +2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +0.7 +0.5 +0.8 +1.5
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