Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06420	PS417_06425	PS417_06430	PS417_06435	PS417_06440
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-0.5	-0.2	-0.2	-0.5
phage	P. simiae OR1 MOI 0.1	-0.8	-0.6	+0.2	-0.1	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.1	-0.2	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.1	+0.3	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.0	+0.1	-0.8	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.4	-0.2	-0.2	-0.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.3	+0.0	+0.2	-0.6	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.6	-0.2	+0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	+0.4	-0.9	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.3	+0.5	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	-0.2	-0.6	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.1	-0.0	-0.6	+0.6
phage	P. simiae Grant Run MOI 0.1	-0.4	+0.2	-0.1	+0.6	-0.3
seeds	Growth on radish seeds for 72 hours	+0.5	+0.3	-0.6	-0.3	+0.1
seeds	Growth on radish seeds for 72 hours	-0.2	+0.5	+0.2	-0.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.1	-0.2	-0.4	+0.3
phage	P. simiae OR Antrim MOI 10	+0.0	-0.5	+0.3	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.1	+0.8	-0.4	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	+0.3	-0.4	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.2	+0.4	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.6	+0.5	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	+0.0	-0.4	+0.3
seeds	Growth on radish seeds for 24 hours	+0.9	+0.2	+0.1	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.4	+0.3	+0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+0.4	-0.3	+0.6	+0.1
root	root sample 6; outgrowth in LB	+0.3	+0.1	-0.0	+0.6	+0.4
phage	P. simiae Grant Run MOI 10	-0.1	+0.3	+0.2	+0.4	+0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.4	+0.2	+0.3	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.0	+0.2	+0.9	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	+0.5	+0.6	+0.6