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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1262 and GFF1263 are separated by 52 nucleotides
GFF1263 and GFF1264 overlap by 4 nucleotides
GFF1264 and GFF1265 are separated by 64 nucleotides
GFF1265 and GFF1266 are separated by 66 nucleotides
GFF1262 - Rhodanese-related sulfurtransferase, at 578,663 to 579,148
GFF1262
GFF1263 - Serine acetyltransferase (EC 2.3.1.30), at 579,201 to 580,118
GFF1263
GFF1264 - Transcriptional regulator, Xre family, at 580,115 to 580,384
GFF1264
GFF1265 - cAMP-binding protein, at 580,449 to 581,381
GFF1265
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
Group
Condition
GFF1262
GFF1263
GFF1264
GFF1265
GFF1266
complex community
Community=guar; Passage=4
-3.1
-0.2
+0.1
-0.7
+0.4
complex community
Community=Locust bean gum; Passage=4
-1.0
-1.1
-0.2
-1.0
-0.0
complex community
Community=arabino-guar; Passage=4
-3.4
-0.3
+0.3
+0.3
-0.2
complex community
Community=Locust bean gum; Passage=4
-3.1
+0.7
+0.9
-0.0
-0.9
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.1
+0.1
-0.6
-0.4
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.5
-0.1
+0.0
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-3.2
+0.6
+0.4
+0.2
+0.0
complex community
Community=guar; Passage=4
-1.0
-0.3
-0.5
+0.4
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.7
-0.4
-0.1
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
-2.0
-0.4
+0.6
+0.4
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
+0.2
-0.5
-0.8
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
+0.1
-0.3
-0.2
+0.1
phage
phage_bap4
-0.5
+0.3
-0.8
-0.2
+0.1
phage
phage_bap4
-0.6
+0.5
-0.3
-0.6
+0.0
complex community
Community=guar; Passage=4
-1.7
+0.3
-0.4
+0.6
+0.2
phage
phage_bap4
-0.6
+0.1
-0.1
-0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.2
+0.2
-0.3
-0.3
complex community
Community=guar; Passage=4
-1.0
-0.0
-0.3
+0.8
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-1.0
+0.1
-0.1
+0.3
+0.1
complex community
Community=Kojac gum; Passage=1
-0.8
+0.2
-0.2
+0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.7
-0.3
+0.1
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.3
-0.9
+0.1
+0.3
phage
phage_bap4
+0.1
+0.5
-0.7
-0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.5
+0.2
-0.2
-0.3
-0.1
complex community
Community=arabino-guar; Passage=4
-1.9
+0.7
+0.4
+0.5
+0.3
complex community
Community=Kojac gum; Passage=4
-1.4
+0.4
+1.5
-0.7
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.2
+0.5
-0.1
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.8
-0.3
+0.7
+0.5
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
+0.3
-0.1
+0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
+0.4
+0.5
+0.2
+0.2
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