Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_06395	PS417_06400	PS417_06405	PS417_06410	PS417_06415
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.1	-1.0	-0.8	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	-0.0	-0.9	-0.8	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	-0.5	-0.9	-0.5	-0.7
seeds	Growth on radish seeds for 72 hours	-1.2	-0.6	-0.4	-0.1	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.3	-0.3	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.1	-0.9	+0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	-0.4	-0.0	-0.3	-0.2
phage	P. simiae Grant Run MOI 10	-2.0	+1.0	-0.6	-0.6	+0.2
stress	Chloramphenicol 0.015 mg/ml	-1.8	+0.1	+0.1	-0.0	-0.3
soil	soil sample 5; outgrowth in LB	-0.2	-1.6	-0.3	+0.2	+0.3
stress	Nalidixic 0.025 mg/ml	-1.2	-0.3	-0.0	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.5	-0.2	+0.2	+0.1
phage	JP1 MOI 1	+0.2	-1.1	-0.1	-0.3	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.4	-0.1	-0.3	-0.3
carbon source	L-Valine (C)	-0.8	+0.4	+0.1	-0.3	-0.4
phage	P. simiae ORA MOI 1	-0.4	-1.0	-0.1	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.9	-0.0	-0.2	-0.7
phage	P. simiae ORA MOI 0.1	-0.5	-0.6	+0.2	+0.4	-0.2
seeds	Growth on radish seeds for 72 hours	+0.3	+0.5	-0.6	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.2	-0.3	+0.3	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	+0.5	-0.3	+0.4	+0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+1.0	-0.6	+0.1	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	-0.4	-0.1	+0.3	-0.4
solid stress	Fraxetin 2 mM; solid stress	+1.0	-0.4	+0.1	+0.2	-0.2
root	root sample 6; outgrowth in LB	+1.2	+0.2	-0.2	+0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.9	+0.2	+0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.8	+0.2	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.6	-0.1	+0.1	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.4	+0.5	+1.1	-0.5
solid stress	Fraxetin 3 mM; solid stress	+0.8	+0.5	+0.3	+0.2	+0.4