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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1256 and GFF1257 are separated by 75 nucleotides
GFF1257 and GFF1259 are separated by 85 nucleotides
GFF1259 and GFF1258 overlap by 2 nucleotides
GFF1258 and GFF1260 overlap by 4 nucleotides
GFF1256 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 574,770 to 575,366
GFF1256
GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657
GFF1257
GFF1259 - no description, at 575,743 to 575,880
GFF1259
GFF1258 - FIG00348129: hypothetical protein, at 575,879 to 576,604
GFF1258
GFF1260 - no description, at 576,601 to 577,167
GFF1260
Group
Condition
GFF1256
GFF1257
GFF1259
GFF1258
GFF1260
complex community
Community=arabino-guar; Passage=4
-3.9
-2.2
+0.5
-0.1
-0.7
complex community
Community=guar; Passage=4
-0.9
-3.7
-1.5
-0.3
+0.1
complex community
Community=Kojac gum; Passage=4
-3.9
-0.4
-0.9
-0.1
+1.0
complex community
Community=arabino-guar; Passage=4
-4.0
-0.1
-0.1
-0.0
+0.5
complex community
Community=Locust bean gum; Passage=4
-3.9
+0.8
+0.1
+0.1
-0.3
complex community
Community=Locust bean gum; Passage=4
-3.8
+0.5
+0.2
-0.3
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.5
-0.4
-0.2
-0.3
-0.2
complex community
Community=guar; Passage=4
-1.3
-0.2
-1.4
-0.1
+0.6
complex community
Community=Locust bean gum; Passage=4
-1.0
+0.9
-1.4
-0.2
-0.3
no phage control
no phage control
-0.4
-0.3
-0.7
+0.2
-0.5
complex community
Community=guar; Passage=4
-0.2
-1.3
+0.2
+0.0
-0.4
complex community
Community=Locust bean gum; Passage=1
-1.7
-0.1
+0.3
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.2
-0.7
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.1
+0.2
-0.1
-0.2
-0.2
no phage control
no phage control
-0.5
-0.3
-0.2
+0.3
-0.4
phage
phage_bap4
-0.7
+0.4
-0.3
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
-1.0
-0.1
+0.4
-0.2
complex community
Community=guar; Passage=4
-0.8
+1.1
-0.4
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.7
-0.1
-0.3
-0.0
-0.4
complex community
Community=Locust bean gum; Passage=4
-1.1
+0.8
-0.0
+0.4
-0.2
phage
phage_bap4
-0.3
+0.7
-0.1
+0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.8
-0.3
+0.3
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.7
-0.5
+0.3
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.9
-0.3
-0.5
+0.3
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+1.1
-0.3
-0.3
+0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.9
+0.5
+1.0
+0.5
-0.3
vitamin
M9 with Supernatant from Cyptococcus
+1.0
-0.2
+0.0
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+1.0
+0.0
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+1.2
+0.6
-0.0
+0.2
-0.2
complex community
Community=arabino-guar; Passage=4
+0.8
+0.7
+0.8
-0.6
+0.5
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