Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06375	PS417_06380	PS417_06385	PS417_06390	PS417_06395
stress	Gentamicin 0.008 mg/ml	-4.1	N.D.	-0.4	-0.7	-0.7
carbon source	NAG (C)	-4.9	N.D.	-0.1	-0.1	-0.5
carbon source	L-Glutamine (C)	-4.9	N.D.	-0.2	+0.0	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-4.9	N.D.	+0.4	+0.1	-0.8
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-4.8	N.D.	+0.2	+0.1	-0.6
stress	Dimethyl Sulfoxide 4 vol%	-5.4	N.D.	+0.1	+0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-4.9	N.D.	+0.3	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.0	N.D.	+0.3	-0.3	-1.0
nitrogen source	Ammonium chloride (N)	-5.1	N.D.	+0.0	+0.1	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-4.6	N.D.	+0.3	-0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.4	N.D.	+0.2	+0.4	-0.9
carbon source	D-Alanine (C)	-5.0	N.D.	-0.1	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.5	N.D.	-0.4	-0.3	+0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-4.8	N.D.	+0.2	-0.2	+0.3
motility	outer cut, LB soft agar motility assay	-4.3	N.D.	+0.4	+0.1	-0.6
nitrogen source	Inosine (N)	-4.9	N.D.	+0.1	+0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.9	N.D.	+0.6	+0.3	+0.1
stress	Polymyxin B sulfate 0.006 mg/ml	-4.8	N.D.	+0.2	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.9	N.D.	+0.2	+0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.0	N.D.	+1.1	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-4.4	N.D.	+0.4	+0.1	+0.5
motility	outer cut, LB soft agar motility assay	-4.2	N.D.	-0.2	+0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.0	N.D.	+0.5	-0.4	+0.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-4.3	N.D.	+0.2	+0.0	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-4.3	N.D.	+0.7	+0.1	+0.3
motility	inner cut, LB soft agar motility assay	-4.3	N.D.	+0.1	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.1	N.D.	+0.6	+0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-4.1	N.D.	+0.4	-0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-4.4	N.D.	+0.6	-0.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.8	N.D.	+0.4	+0.1	+1.2