Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_06365	PS417_06370	PS417_06375	PS417_06380	PS417_06385
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-2.8	-4.4	N.D.	+0.2
solid stress	Fraxetin 3 mM; solid stress	-3.9	-2.1	-1.3	N.D.	+0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-1.4	-1.1	-4.5	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-2.3	-4.1	N.D.	-0.1
solid stress	Fraxetin 3 mM; solid stress	-3.2	-0.9	-2.1	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-2.4	-4.1	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-3.3	-4.0	N.D.	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-2.1	-3.8	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.8	+0.5	-4.9	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-1.6	-4.2	N.D.	+0.6
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+1.3	-1.1	-4.6	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.6	-1.9	-3.8	N.D.	+0.4
nitrogen source	Inosine (N)	+1.2	-0.1	-4.9	N.D.	+0.1
carbon source	Xylitol (C)	+1.0	+0.6	-4.6	N.D.	-0.1
carbon source	D-Glucose-6-Phosphate (C)	+1.6	-0.3	-4.5	N.D.	+0.2
carbon source	Fumarate (C)	+1.2	+0.6	-4.7	N.D.	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+1.8	-0.2	-4.5	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+3.5	-2.0	-4.0	N.D.	+0.2
soil	soil sample 2; outgrowth in LB	+6.1	-0.9	-3.6	N.D.	+0.1
soil	soil sample 3; outgrowth in LB	+7.2	-1.8	-3.4	N.D.	+0.7
soil	soil sample 8; outgrowth in LB	+7.4	-0.0	-3.6	N.D.	+0.1
soil	soil sample 6; outgrowth in LB	+7.6	+0.2	-3.6	N.D.	+0.0
soil	soil sample 4; outgrowth in LB	+7.6	+0.6	-3.4	N.D.	+0.3
soil	soil sample 7; outgrowth in LB	+7.4	+1.0	-3.7	N.D.	+0.4
soil	soil sample 5; outgrowth in LB	+8.3	+0.6	-3.5	N.D.	+0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+9.8	+0.2	-2.9	N.D.	-0.0
root	root sample 6; outgrowth in LB	+10.6	-1.1	-2.5	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+6.9	+0.0	+0.2	N.D.	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+9.8	+0.2	-2.7	N.D.	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+10.0	+0.4	-2.6	N.D.	+0.4