Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06360 and PS417_06365 are separated by 106 nucleotidesPS417_06365 and PS417_06370 are separated by 206 nucleotidesPS417_06370 and PS417_06375 are separated by 388 nucleotidesPS417_06375 and PS417_06380 are separated by 108 nucleotides PS417_06360: PS417_06360 - peptigoglycan-binding protein LysM, at 1,411,272 to 1,412,108 _06360 PS417_06365: PS417_06365 - RNA polymerase sigma factor, at 1,412,215 to 1,413,219 _06365 PS417_06370: PS417_06370 - cold-shock protein, at 1,413,426 to 1,413,635 _06370 PS417_06375: PS417_06375 - deoxycytidine triphosphate deaminase, at 1,414,024 to 1,414,590 _06375 PS417_06380: PS417_06380 - hypothetical protein, at 1,414,699 to 1,414,896 _06380
Group Condition PS417_06360 PS417_06365 PS417_06370 PS417_06375 PS417_06380
solid stress Fraxetin 3 mM; solid stress N.D. -3.9 -2.1 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 -2.8 -4.4 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -1.4 -1.1 -4.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -3.3 -4.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.0 -2.3 -4.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -2.4 -4.1 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -3.2 -0.9 -2.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -1.6 -4.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.8 +0.5 -4.9 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +1.3 -1.1 -4.6 N.D.
stress R2A with Fusaric 120 ug/mL N.D. +0.9 -1.9 -3.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.6 -1.9 -3.8 N.D.
nitrogen source Inosine (N) N.D. +1.2 -0.1 -4.9 N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. +1.6 -0.3 -4.5 N.D.
carbon source Xylitol (C) N.D. +1.0 +0.6 -4.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +1.8 -0.2 -4.5 N.D.
carbon source Fumarate (C) N.D. +1.2 +0.6 -4.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +3.5 -2.0 -4.0 N.D.
soil soil sample 2; outgrowth in LB N.D. +6.1 -0.9 -3.6 N.D.
soil soil sample 3; outgrowth in LB N.D. +7.2 -1.8 -3.4 N.D.
soil soil sample 8; outgrowth in LB N.D. +7.4 -0.0 -3.6 N.D.
soil soil sample 6; outgrowth in LB N.D. +7.6 +0.2 -3.6 N.D.
soil soil sample 4; outgrowth in LB N.D. +7.6 +0.6 -3.4 N.D.
soil soil sample 7; outgrowth in LB N.D. +7.4 +1.0 -3.7 N.D.
soil soil sample 5; outgrowth in LB N.D. +8.3 +0.6 -3.5 N.D.
root root sample 6; outgrowth in LB N.D. +10.6 -1.1 -2.5 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +9.8 +0.2 -2.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +6.9 +0.0 +0.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +9.8 +0.2 -2.7 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +10.0 +0.4 -2.6 N.D.
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