Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06340 and PS417_06345 overlap by 4 nucleotidesPS417_06345 and PS417_06350 overlap by 13 nucleotidesPS417_06350 and PS417_06355 overlap by 1 nucleotidesPS417_06355 and PS417_06360 are separated by 209 nucleotides PS417_06340: PS417_06340 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,408,120 to 1,408,593 _06340 PS417_06345: PS417_06345 - pseudouridine synthase, at 1,408,590 to 1,409,648 _06345 PS417_06350: PS417_06350 - stationary phase survival protein SurE, at 1,409,636 to 1,410,385 _06350 PS417_06355: PS417_06355 - protein-L-isoaspartate O-methyltransferase, at 1,410,385 to 1,411,062 _06355 PS417_06360: PS417_06360 - peptigoglycan-binding protein LysM, at 1,411,272 to 1,412,108 _06360
Group Condition PS417_06340 PS417_06345 PS417_06350 PS417_06355 PS417_06360
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.1 -1.3 -2.5 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.4 -1.6 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -1.5 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.6 -2.1 N.D.
seeds Growth on radish seeds for 72 hours N.D. -0.3 -0.6 -2.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -1.8 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.4 -2.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -1.0 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -1.1 -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -1.4 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 -1.2 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -1.2 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -0.8 -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -1.0 -1.1 N.D.
stress Nalidixic 0.025 mg/ml N.D. -0.3 -1.1 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -1.3 -0.6 N.D.
stress Nalidixic 0.015 mg/ml N.D. -0.2 -0.8 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.6 -1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.5 +0.5 -0.8 N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM N.D. -0.5 +0.6 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 -0.2 +1.5 N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. -0.2 +0.5 +1.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.3 +0.4 +1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.1 +0.7 +1.1 N.D.
stress L-Lysine 60 mM N.D. -0.2 +0.7 +1.3 N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. +0.3 +0.5 +1.1 N.D.
stress Gentamicin 0.008 mg/ml N.D. +0.2 +0.4 +1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.1 -0.0 +2.3 N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. +0.2 +0.8 +1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -0.7 +4.2 N.D.
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