Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_06325	PS417_06330	PS417_06335	PS417_06340	PS417_06345
solid stress	Fraxetin 3 mM; solid stress	-1.6	-4.0	-4.7	N.D.	-0.4
solid stress	Fraxetin 3 mM; solid stress	-2.8	-3.9	-4.0	N.D.	+0.1
solid stress	Fraxetin 2 mM; solid stress	-1.1	-4.4	-2.7	N.D.	-0.3
solid stress	Fraxetin 2 mM; solid stress	-1.0	-1.5	-6.2	N.D.	+0.4
stress	methylglyoxal 0.032 vol%	-2.2	-4.4	-0.9	N.D.	-0.1
solid stress	Fraxetin 3 mM; solid stress	-1.7	-2.3	-3.5	N.D.	+0.1
solid stress	Fraxetin 2 mM; solid stress	-0.9	-1.1	-4.5	N.D.	+0.1
solid stress	Fraxetin 2 mM; solid stress	-0.8	-1.3	-4.1	N.D.	-0.0
solid stress	Fraxetin 2 mM; solid stress	-0.8	-1.3	-3.7	N.D.	-0.2
solid stress	Fraxetin 3 mM; solid stress	-1.7	-2.0	-2.3	N.D.	+0.3
seeds	Growth on radish seeds for 72 hours	-0.6	-1.7	-1.1	N.D.	-0.0
seeds	Growth on radish seeds for 72 hours	-0.6	-1.0	-1.4	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	-0.1	-1.9	-1.0	N.D.	+0.4
solid stress	80% Methanol 0.5 mM; solid stress	-0.6	-0.9	-1.0	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-0.3	-1.3	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.8	-1.1	N.D.	+0.1
solid stress	Fraxetin 1 mM; solid stress	-0.0	-0.6	-1.3	N.D.	+0.1
solid stress	Fraxetin 1 mM; solid stress	-0.1	-0.4	-1.6	N.D.	+0.3
soil	soil sample 4; outgrowth in LB	+0.2	-0.3	-1.5	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	-1.2	N.D.	-0.6
seeds	Growth on radish seeds for 24 hours	-0.1	-1.1	-0.6	N.D.	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.8	-0.5	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.9	-0.7	N.D.	+0.1
supernatant control	Vogels_fungal_media 0.1X	-0.5	+0.7	-1.1	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.6	+0.7	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-1.1	+0.6	N.D.	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.3	-1.4	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.7	+0.6	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	+0.2	+2.1	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.1	+1.5	N.D.	+0.5