Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06315 and PS417_06320 overlap by 4 nucleotidesPS417_06320 and PS417_06325 are separated by 129 nucleotidesPS417_06325 and PS417_06330 are separated by 109 nucleotidesPS417_06330 and PS417_06335 are separated by 8 nucleotides PS417_06315: PS417_06315 - cell division protein FtsB, at 1,403,981 to 1,404,259 _06315 PS417_06320: PS417_06320 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,404,256 to 1,404,963 _06320 PS417_06325: PS417_06325 - LysR family transcriptional regulator, at 1,405,093 to 1,405,989 _06325 PS417_06330: PS417_06330 - S-(hydroxymethyl)glutathione dehydrogenase, at 1,406,099 to 1,407,211 _06330 PS417_06335: PS417_06335 - S-formylglutathione hydrolase, at 1,407,220 to 1,408,065 _06335
Group Condition PS417_06315 PS417_06320 PS417_06325 PS417_06330 PS417_06335
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -2.8 -3.9 -4.0
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -1.6 -4.0 -4.7
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -1.0 -1.5 -6.2
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -1.1 -4.4 -2.7
stress methylglyoxal 0.032 vol% N.D. N.D. -2.2 -4.4 -0.9
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -1.7 -2.3 -3.5
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -0.9 -1.1 -4.5
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -0.8 -1.3 -4.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -1.7 -2.0 -2.3
solid stress Fraxetin 2 mM; solid stress N.D. N.D. -0.8 -1.3 -3.7
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.6 -1.7 -1.1
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.6 -1.0 -1.4
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.1 -1.9 -1.0
solid stress 80% Methanol 0.5 mM; solid stress N.D. N.D. -0.6 -0.9 -1.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.3 -0.8 -1.1
solid stress Fraxetin 1 mM; solid stress N.D. N.D. -0.1 -0.4 -1.6
solid stress Fraxetin 1 mM; solid stress N.D. N.D. -0.0 -0.6 -1.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.6 -0.8 -0.5
carbon source L-Valine (C) N.D. N.D. -0.2 +0.0 -1.7
seeds Growth on radish seeds for 24 hours N.D. N.D. -0.1 -1.1 -0.6
soil soil sample 4; outgrowth in LB N.D. N.D. +0.2 -0.3 -1.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.2 -0.2 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.4 -0.9 -0.7
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.5 +0.7 -1.1
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. +0.3 +0.3 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.3 -1.1 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.7 -0.7 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.0 +1.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.4 -0.1 +1.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.4 +0.2 +2.1
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