Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06275 and PS417_06280 overlap by 4 nucleotidesPS417_06280 and PS417_06285 are separated by 73 nucleotidesPS417_06285 and PS417_06290 are separated by 137 nucleotidesPS417_06290 and PS417_06295 are separated by 174 nucleotides PS417_06275: PS417_06275 - lipid-A-disaccharide synthase, at 1,391,651 to 1,392,790 _06275 PS417_06280: PS417_06280 - ribonuclease HII, at 1,392,787 to 1,393,419 _06280 PS417_06285: PS417_06285 - DNA polymerase III subunit alpha, at 1,393,493 to 1,397,014 _06285 PS417_06290: PS417_06290 - acetyl-CoA carboxylase subunit alpha, at 1,397,152 to 1,398,099 _06290 PS417_06295: PS417_06295 - tRNA(Ile)-lysidine synthetase, at 1,398,274 to 1,399,593 _06295
Group Condition PS417_06275 PS417_06280 PS417_06285 PS417_06290 PS417_06295
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 N.D. N.D. N.D.
phage JP1 MOI 10 N.D. -0.9 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 N.D. N.D. N.D.
seeds Growth on radish seeds for 24 hours N.D. -0.8 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.8 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.8 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. -0.8 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.7 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x N.D. -0.7 N.D. N.D. N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 N.D. -0.7 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x N.D. -0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. N.D. N.D.
soil soil sample 5; outgrowth in LB N.D. -0.6 N.D. N.D. N.D.
solid stress Scopoletin 0.5 mM; solid stress N.D. -0.6 N.D. N.D. N.D.
carbon source D-Sorbitol (C) N.D. +0.7 N.D. N.D. N.D.
stress Chloramphenicol 0.0075 mg/ml N.D. +0.7 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.7 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.7 N.D. N.D. N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. +0.8 N.D. N.D. N.D.
carbon source L-Valine (C) N.D. +0.8 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.8 N.D. N.D. N.D.
motility outer cut, LB soft agar motility assay N.D. +0.8 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.9 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.2 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% N.D. +1.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +1.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +2.4 N.D. N.D. N.D.
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PS417_06275
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PS417_06280
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PS417_06290
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