Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1234 and GFF1235 are separated by 102 nucleotidesGFF1235 and GFF1236 are separated by 104 nucleotidesGFF1236 and GFF1237 are separated by 7 nucleotidesGFF1237 and GFF1238 are separated by 98 nucleotides GFF1234 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 553,872 to 554,573 GFF1234 GFF1235 - Methionine sulfoxide reductase-associated methionine-rich protein, at 554,676 to 554,942 GFF1235 GFF1236 - Methionine sulfoxide reductase molybdopterin-binding subunit, at 555,047 to 555,838 GFF1236 GFF1237 - Methionine sulfoxide reductase cytochrome b subunit, at 555,846 to 556,502 GFF1237 GFF1238 - Two-component transcriptional response regulator, OmpR family, at 556,601 to 557,326 GFF1238
Group Condition GFF1234 GFF1235 GFF1236 GFF1237 GFF1238
complex community Community=guar; Passage=4 -0.0 N.D. -0.0 -1.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 N.D. -0.2 -0.3 -0.0
vitamin M9 with Supernatant from Cyptococcus +0.0 N.D. -0.2 -0.5 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 N.D. +0.1 -0.5 -0.2
complex community Community=Locust bean gum; Passage=4 +0.1 N.D. +0.3 -1.0 +0.1
complex community Community=Kojac gum; Passage=1 -0.0 N.D. -0.1 -0.3 +0.0
phage phage_bap4 -0.2 N.D. +0.1 -0.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 N.D. -0.2 -0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 N.D. +0.1 -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 N.D. -0.2 -0.3 +0.0
no phage control no phage control -0.3 N.D. +0.1 -0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 N.D. +0.1 -0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. -0.2 -0.1 -0.2
complex community Community=Kojac gum; Passage=4 -0.1 N.D. +0.3 -0.1 -0.4
phage phage_bap4 -0.1 N.D. -0.1 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.3 N.D. -0.0 -0.3 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.1 N.D. +0.1 -0.1 -0.3
complex community Community=guar; Passage=4 +0.2 N.D. +0.1 +0.0 -0.5
complex community Community=arabino-guar; Passage=4 -0.1 N.D. +0.2 -0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 N.D. -0.0 +0.0 -0.4
complex community Community=arabino-guar; Passage=4 +0.4 N.D. -0.1 -0.5 +0.0
complex community Community=Locust bean gum; Passage=4 +0.1 N.D. +0.3 -0.7 +0.2
phage phage_bap4 -0.1 N.D. -0.2 +0.1 +0.2
complex community Community=guar; Passage=4 +0.1 N.D. -0.1 +0.2 -0.3
complex community Community=arabino-guar; Passage=4 +0.7 N.D. -0.1 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. -0.1 -0.2 +0.3
complex community Community=Locust bean gum; Passage=4 +0.2 N.D. +0.0 -0.3 +0.3
phage phage_bap4 -0.2 N.D. +0.0 +0.2 +0.1
phage phage_bap4 -0.1 N.D. +0.1 -0.0 +0.3
complex community Community=guar; Passage=4 +0.1 N.D. +0.1 -0.2 +0.3
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