Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06225 and PS417_06230 are separated by 17 nucleotidesPS417_06230 and PS417_06235 are separated by 0 nucleotidesPS417_06235 and PS417_06240 overlap by 4 nucleotidesPS417_06240 and PS417_06245 are separated by 53 nucleotides PS417_06225: PS417_06225 - ribosome-recycling factor, at 1,381,523 to 1,382,080 _06225 PS417_06230: PS417_06230 - farnesyl-diphosphate synthase, at 1,382,098 to 1,382,853 _06230 PS417_06235: PS417_06235 - phosphatidate cytidylyltransferase, at 1,382,854 to 1,383,660 _06235 PS417_06240: PS417_06240 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,383,657 to 1,384,847 _06240 PS417_06245: PS417_06245 - zinc metallopeptidase RseP, at 1,384,901 to 1,386,253 _06245
Group Condition PS417_06225 PS417_06230 PS417_06235 PS417_06240 PS417_06245
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -5.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -5.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -5.4
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. N.D. -4.2
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. N.D. N.D. -4.0
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. N.D. -4.0
stress Phosphomycin 0.003 mg/ml N.D. N.D. N.D. N.D. -3.9
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. N.D. -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -3.6
stress Polymyxin B sulfate 0.006 mg/ml N.D. N.D. N.D. N.D. -3.3
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 N.D. N.D. N.D. N.D. -3.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -3.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -3.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -3.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -3.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -3.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -3.1
phage P. simiae ORA MOI 0.1 N.D. N.D. N.D. N.D. -3.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -3.1
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. N.D. -3.0
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. N.D. -3.0
phage P. simiae Grant Run MOI 10 N.D. N.D. N.D. N.D. -2.9
phage P. simiae OR Antrim MOI 10 N.D. N.D. N.D. N.D. -2.8
phage P. simiae OR Antrim MOI 0.1 N.D. N.D. N.D. N.D. -2.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. N.D. -2.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +2.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +2.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +3.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +3.3
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