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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1221 and GFF1222 are separated by 9 nucleotides
GFF1222 and GFF1223 are separated by 192 nucleotides
GFF1223 and GFF1224 are separated by 15 nucleotides
GFF1224 and GFF1225 are separated by 149 nucleotides
GFF1221 - KEGG: putative acetyltransferase , at 541,069 to 541,521
GFF1221
GFF1222 - Methylglyoxal synthase (EC 4.2.3.3), at 541,531 to 542,454
GFF1222
GFF1223 - Aldo/keto reductase, SMc04056 family, at 542,647 to 543,675
GFF1223
GFF1224 - Transcriptional regulator, LysR family, at 543,691 to 544,584
GFF1224
GFF1225 - Glycine/D-amino acid oxidases (deaminating), at 544,734 to 545,906
GFF1225
Group
Condition
GFF1221
GFF1222
GFF1223
GFF1224
GFF1225
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.7
-0.3
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.4
-1.0
-0.6
-0.0
+0.1
complex community
Community=arabino-guar; Passage=4
-0.3
-0.2
-0.0
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.6
+0.0
+0.0
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.4
-0.1
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.3
-0.1
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.3
-0.1
-0.4
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.3
-0.1
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.6
+0.0
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.5
-0.1
+0.2
-0.1
phage
phage_bap4
+0.2
-0.4
-0.1
-0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.3
+0.2
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.3
-0.0
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
-0.5
+0.1
+0.1
-0.1
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.6
+0.2
+0.2
-0.1
phage
phage_bap4
+0.1
-0.5
+0.1
+0.2
+0.1
complex community
Community=guar; Passage=4
+0.4
-0.6
+0.1
-0.2
+0.3
complex community
Community=arabino-guar; Passage=4
-0.1
+0.8
+0.0
-0.6
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.1
+0.1
-0.1
-0.1
no phage control
no phage control
+0.0
-0.3
+0.1
+0.3
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.4
+0.1
-0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-0.0
+0.2
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.1
+0.5
-0.1
-0.3
+0.1
complex community
Community=Locust bean gum; Passage=1
-0.2
+0.2
+0.2
-0.0
+0.1
complex community
Community=guar; Passage=4
+0.0
-0.4
+0.4
+0.5
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.0
+0.4
+0.3
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
-0.1
+0.3
+0.2
+0.1
phage
phage_bap4
+0.1
+0.1
-0.0
+0.4
+0.1
phage
phage_bap4
+0.2
+0.2
+0.2
+0.2
+0.2
complex community
Community=Kojac gum; Passage=4
+0.2
-0.3
+0.7
+0.3
+0.1
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