Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1217 and GFF1218 are separated by 207 nucleotidesGFF1218 and GFF1219 are separated by 166 nucleotidesGFF1219 and GFF1220 are separated by 73 nucleotidesGFF1220 and GFF1221 overlap by 23 nucleotides GFF1217 - Transcriptional regulator RpiR in protein degradation cluster, at 537,139 to 538,140 GFF1217 GFF1218 - O-antigen acetylase, at 538,348 to 539,502 GFF1218 GFF1219 - SAM-dependent methyltransferase, at 539,669 to 540,541 GFF1219 GFF1220 - Transcriptional regulator, MerR family, at 540,615 to 541,091 GFF1220 GFF1221 - KEGG: putative acetyltransferase , at 541,069 to 541,521 GFF1221
Group Condition GFF1217 GFF1218 GFF1219 GFF1220 GFF1221
complex community Community=Locust bean gum; Passage=4 +0.0 +0.1 -3.6 +0.0 -0.1
complex community Community=Locust bean gum; Passage=4 -0.4 +0.1 -2.3 -0.5 +0.1
phage phage_bap4 +0.0 -0.2 -1.8 -0.1 +0.0
phage phage_bap4 -0.1 -0.1 -0.6 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.0 -0.6 +0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.1 -0.6 +0.1 -0.2
phage phage_bap4 -0.1 +0.0 -1.0 +0.3 +0.2
no phage control no phage control +0.1 +0.0 -1.0 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.1 -0.5 +0.0 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.1 -0.5 -0.1 +0.2
complex community Community=Locust bean gum; Passage=1 +0.2 +0.1 -0.1 -0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 -0.0 -0.7 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.1 -0.4 +0.2 -0.1
complex community Community=arabino-guar; Passage=4 -0.5 +0.1 +0.5 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.1 -0.1 -0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.0 -0.4 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.0 +0.9 -0.6 -0.5
complex community Community=Kojac gum; Passage=4 +0.3 +0.1 -1.3 +0.9 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.0 +0.2 +0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.2 -0.2 +0.4 -0.0
complex community Community=guar; Passage=4 +0.3 +0.1 +0.3 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 -0.1 +0.5 +0.0 -0.0
complex community Community=Locust bean gum; Passage=4 +0.8 +0.3 -0.6 -0.2 +0.4
vitamin M9 with Supernatant from Cyptococcus -0.1 +0.0 +0.6 +0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.1 +0.5 +0.1 +0.3
complex community Community=arabino-guar; Passage=4 -0.0 +0.1 +1.5 -0.5 -0.1
complex community Community=Locust bean gum; Passage=4 +0.4 +0.3 +0.2 +0.4 -0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 +0.1 +0.8 +0.1 -0.0
complex community Community=guar; Passage=4 +0.6 -0.1 +0.8 +0.2 +0.0
complex community Community=guar; Passage=4 +0.2 +0.2 +1.3 +0.1 +0.4
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