Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06170 and PS417_06175 overlap by 4 nucleotidesPS417_06175 and PS417_06180 are separated by 64 nucleotidesPS417_06180 and PS417_06185 are separated by 33 nucleotidesPS417_06185 and PS417_06190 are separated by 213 nucleotides PS417_06170: PS417_06170 - Fe-S metabolism protein SufE, at 1,368,486 to 1,368,899 _06170 PS417_06175: PS417_06175 - cysteine sulfinate desulfinase, at 1,368,896 to 1,370,101 _06175 PS417_06180: PS417_06180 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 1,370,166 to 1,371,200 _06180 PS417_06185: PS417_06185 - ArsC family transcriptional regulator, at 1,371,234 to 1,371,596 _06185 PS417_06190: PS417_06190 - sodium:proton antiporter, at 1,371,810 to 1,373,453 _06190
Group Condition PS417_06170 PS417_06175 PS417_06180 PS417_06185 PS417_06190
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 N.D. N.D. -0.7
carbon source L-Alanine (C) N.D. -1.8 N.D. N.D. -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.3 N.D. N.D. -1.3
soil soil sample 3; outgrowth in LB N.D. -0.7 N.D. N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.1 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.0 N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.1 N.D. N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 N.D. N.D. -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.4 N.D. N.D. +0.0
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.8 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.7 N.D. N.D. -0.5
seeds Growth on radish seeds for 72 hours N.D. -0.6 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.1 N.D. N.D. -0.1
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. -1.2 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 N.D. N.D. +0.5
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -1.1 N.D. N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.5 N.D. N.D. -0.8
soil soil sample 2; outgrowth in LB N.D. -1.0 N.D. N.D. +0.8
stress methylglyoxal 0.032 vol% N.D. -0.9 N.D. N.D. +0.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.7 N.D. N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.9 N.D. N.D. -0.3
stress Phosphomycin 0.001 mg/ml N.D. +1.1 N.D. N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.9 N.D. N.D. +0.3
stress Phosphomycin 0.002 mg/ml N.D. +0.7 N.D. N.D. +0.5
phage moi 100 Time6-phageFRS N.D. +0.3 N.D. N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 N.D. N.D. +1.0
nitrogen source Adenine (N) N.D. +0.7 N.D. N.D. +0.7
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