Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06160	PS417_06165	PS417_06170	PS417_06175	PS417_06180
carbon source	L-Alanine (C)	+0.1	-1.5	N.D.	-1.8	N.D.
carbon source	L-Alanine (C)	+0.1	-1.8	N.D.	-1.1	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	-1.3	N.D.	-1.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.2	N.D.	-2.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.5	N.D.	-0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.0	N.D.	-1.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-1.2	N.D.	-0.7	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.1	-0.9	N.D.	-0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.7	N.D.	-0.7	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.6	N.D.	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.8	N.D.	-0.7	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	-1.1	N.D.	-0.7	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.7	N.D.	-1.1	N.D.
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.2	-0.7	N.D.	-0.9	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.2	N.D.	-0.8	N.D.
stress	Cisplatin 0.01 mg/ml	+0.3	-0.9	N.D.	-0.7	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-1.0	N.D.	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	-1.4	N.D.	-0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	-0.7	N.D.	-0.7	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	-0.7	N.D.	-0.5	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.8	-0.1	N.D.	-1.0	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	-1.3	N.D.	+0.0	N.D.
stress	Neomycin 0.04 mg/ml	+0.7	-0.7	N.D.	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	-0.4	N.D.	-0.6	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	+1.5	N.D.	-1.4	N.D.
solid stress	Fraxetin 3 mM; solid stress	+0.9	-1.1	N.D.	+0.5	N.D.
stress	methylglyoxal 0.032 vol%	+0.2	+1.0	N.D.	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.2	N.D.	-0.2	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+0.3	N.D.	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+1.8	N.D.	+0.9	N.D.