Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00600	PS417_00605	PS417_00610	PS417_00615	PS417_00620
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.1	-0.4	-0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.0	+0.1	+0.2	-1.1
solid stress	Fraxetin 3 mM; solid stress	+0.2	+0.1	-0.3	+0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.4	-0.1	-0.0	+0.8
carbon source	L-Valine (C)	-0.1	+0.1	+0.6	-0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	+0.3	-0.5	+0.5
stress	methylglyoxal 0.032 vol%	+0.4	+0.1	+0.2	-0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	-0.5	+0.1	+0.8
phage	P. simiae OR Antrim MOI 1	-0.2	-0.1	+0.4	-0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.3	-0.1	+0.1	+1.1
seeds	Growth on radish seeds for 72 hours	-0.3	-0.1	+0.5	-0.4	+0.5
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.2	+0.2	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.2	-0.1	+0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.0	-0.2	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.1	+0.6	+0.6	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	+0.1	-0.2	+0.3	+0.8
phage	JP1 MOI 10	+0.2	-0.2	+0.4	-0.2	+0.5
phage	P. simiae OR1 MOI 0.1	-0.2	+0.0	+0.4	-0.3	+0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.0	+0.0	-0.3	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	+0.2	+0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.0	+0.5	+0.7	-0.2
soil	soil sample 4; outgrowth in LB	+0.0	-0.1	-0.2	-0.2	+1.4
soil	soil sample 2; outgrowth in LB	-0.5	+0.0	-0.3	-0.1	+1.9
soil	soil sample 8; outgrowth in LB	-0.4	-0.1	+0.2	+0.4	+1.1
root	root sample 6; outgrowth in LB	-0.5	-0.2	-0.1	-0.1	+2.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.2	+0.6	-0.1	+0.7
soil	soil sample 6; outgrowth in LB	-0.1	-0.0	+0.3	-0.3	+1.7
soil	soil sample 5; outgrowth in LB	-0.1	-0.0	-0.1	-0.1	+2.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.1	+0.2	+0.2	+1.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	+0.1	+0.1	+0.2	+1.7