Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06080	PS417_06085	PS417_06090	PS417_06095	PS417_06100
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	-0.2	-0.0	-4.6	+0.5
phage	JP1 MOI 10	-0.3	-0.4	+0.1	-4.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.1	-0.4	-0.7	-2.0
phage	P. simiae Grant Run MOI 0.1	+0.0	-0.3	+0.0	-2.0	-0.5
nophagecontrol	Only library	-0.1	-0.4	+0.0	-3.3	+1.0
motility	inner cut, LB soft agar motility assay	-0.2	-0.5	-0.2	-1.5	-0.3
stress	Gentamicin 0.008 mg/ml	-0.7	+0.0	+0.0	+0.7	-2.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.2	+0.6	-2.9
phage	P. simiae ORA MOI 10	-0.2	+0.0	-0.2	-1.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	+0.0	-1.8	-0.1
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.2	+0.2	-0.7	-1.3
phage	Wcs_1	+0.0	+0.3	-0.3	-1.9	-0.2
phage	P. simiae Grant Run MOI 0.1	+0.2	-0.0	+0.2	-1.6	-0.8
phage	P. simiae ORA MOI 0.1	-0.5	-0.4	-0.2	-1.0	+0.3
root	root sample 6; outgrowth in LB	+0.2	+0.4	+0.2	-2.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	-0.1	+0.7	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-0.2	-1.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.1	-0.4	+0.2	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.3	-0.0	-1.5	-0.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	-0.6	+0.3	-1.5	+0.2
seeds	Growth on radish seeds for 72 hours	+0.3	+0.5	+0.4	-0.4	-2.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.4	-0.0	-1.4	+0.3
phage	JP1 MOI 10	-0.2	-0.9	-0.3	-0.7	+0.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.0	+0.7	-1.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.6	-0.1	+1.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.0	+0.2	+1.3	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.4	-0.3	+0.4	+1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.2	+0.1	+1.6	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.5	+0.3	+1.5	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.1	+0.1	+3.0