Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_06050 and PS417_06055 are separated by 270 nucleotidesPS417_06055 and PS417_06060 are separated by 185 nucleotidesPS417_06060 and PS417_06065 are separated by 297 nucleotidesPS417_06065 and PS417_06070 are separated by 89 nucleotides PS417_06050: PS417_06050 - chromosome partitioning protein ParA, at 1,342,398 to 1,342,823 _06050 PS417_06055: PS417_06055 - pilin assembly protein, at 1,343,094 to 1,343,438 _06055 PS417_06060: PS417_06060 - phosphoenolpyruvate carboxylase, at 1,343,624 to 1,346,251 _06060 PS417_06065: PS417_06065 - adenylate kinase, at 1,346,549 to 1,347,196 _06065 PS417_06070: PS417_06070 - peptidase M22, at 1,347,286 to 1,347,972 _06070
Group Condition PS417_06050 PS417_06055 PS417_06060 PS417_06065 PS417_06070
carbon source octanoate (C) N.D. +0.1 -2.3 N.D. N.D.
carbon source octanoate (C) N.D. +0.2 -2.0 N.D. N.D.
nitrogen source Adenine (N) N.D. -0.2 -1.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.3 -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -0.8 N.D. N.D.
phage P. simiae ORA MOI 0.1 N.D. -0.8 -0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -0.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -0.2 N.D. N.D.
phage JP1 MOI 10 N.D. -0.3 -0.6 N.D. N.D.
carbon source L-Isoleucine (C) N.D. -0.1 -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 -1.1 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.3 -0.4 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.4 -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.6 +0.1 N.D. N.D.
carbon source L-Valine (C) N.D. +0.6 -1.0 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.8 -1.0 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -0.4 N.D. N.D.
carbon source Ethanol (C) N.D. +0.3 -0.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.4 +0.3 N.D. N.D.
carbon source acetate (C) N.D. +0.3 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 +0.5 N.D. N.D.
solid stress Fraxetin 2 mM; solid stress N.D. +0.4 -0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 -0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 +0.2 N.D. N.D.
phage P. simiae OR Antrim MOI 10 N.D. +0.3 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.6 +0.3 N.D. N.D.
stress Gentamicin 0.008 mg/ml N.D. +0.8 +0.5 N.D. N.D.
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