Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05985 and PS417_05990 are separated by 51 nucleotidesPS417_05990 and PS417_06000 are separated by 453 nucleotidesPS417_06000 and PS417_06005 are separated by 83 nucleotidesPS417_06005 and PS417_06010 are separated by 106 nucleotides PS417_05985: PS417_05985 - chemotaxis protein CheY, at 1,331,450 to 1,332,460 _05985 PS417_05990: PS417_05990 - diguanylate cyclase, at 1,332,512 to 1,333,513 _05990 PS417_06000: PS417_06000 - peptide chain release factor 2, at 1,333,967 to 1,334,848 _06000 PS417_06005: PS417_06005 - lysyl-tRNA synthetase, at 1,334,932 to 1,336,431 _06005 PS417_06010: PS417_06010 - TetR family transcriptional regulator, at 1,336,538 to 1,337,254 _06010
Group Condition PS417_05985 PS417_05990 PS417_06000 PS417_06005 PS417_06010
phage JP1 MOI 1 -3.7 -0.1 N.D. N.D. -0.3
phage JP1 MOI 10 -3.1 +0.6 N.D. N.D. -0.7
phage JP1 MOI 0.1 -3.4 +0.5 N.D. N.D. -0.3
phage P. simiae Grant Run MOI 0.1 -3.6 +0.6 N.D. N.D. -0.2
phage P. simiae OR Antrim MOI 1 -3.0 +0.3 N.D. N.D. -0.1
phage P. simiae OR Antrim MOI 10 -2.8 +0.0 N.D. N.D. +0.2
phage P. simiae OR Antrim MOI 1 -3.1 +0.7 N.D. N.D. -0.3
phage JP1 MOI 10 -2.9 +1.0 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 +0.6 N.D. N.D. +0.0
phage P. simiae Grant Run MOI 10 -3.0 +0.8 N.D. N.D. -0.1
phage P. simiae ORA MOI 1 -2.7 +0.5 N.D. N.D. -0.0
phage P. simiae ORA MOI 10 -2.4 +0.4 N.D. N.D. -0.1
phage P. simiae OR Antrim MOI 0.1 -2.9 +0.8 N.D. N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 +0.6 N.D. N.D. -0.1
phage P. simiae Grant Run MOI 0.1 -2.6 +0.4 N.D. N.D. +0.3
stress Choline chloride 300 mM -2.3 +0.6 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 +0.8 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 +1.0 N.D. N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 +0.8 N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 +1.4 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 +1.3 N.D. N.D. +0.3
soil soil sample 5; outgrowth in LB +2.3 -0.8 N.D. N.D. +0.3
ecofab LB in EcoFAB_3.5mL +2.8 -0.0 N.D. N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.9 -0.1 N.D. N.D. +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +2.6 +0.2 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.2 -0.0 N.D. N.D. -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +3.4 -0.1 N.D. N.D. +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +3.5 +0.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.3 +0.3 N.D. N.D. +0.2
root root sample 6; outgrowth in LB +4.3 +0.4 N.D. N.D. +0.1
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