Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05940	PS417_05945	PS417_05950	PS417_05955	PS417_05960
stress	methylglyoxal 0.032 vol%	-0.2	-0.3	+0.1	-1.1	-0.6
soil	soil sample 3; outgrowth in LB	-0.4	-0.2	-0.1	-0.7	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.4	-0.5	-0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.4	-0.4	-0.2	+0.3
phage	P. simiae Grant Run MOI 0.1	-0.1	-0.1	-0.3	+0.2	-1.0
soil	soil sample 4; outgrowth in LB	+0.4	+0.1	-0.5	-0.5	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	+0.1	-0.2	-0.4	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.1	+0.5	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.4	-0.3	-0.3	+0.5
seeds	Growth on radish seeds for 72 hours	-0.6	+0.6	-0.4	-0.1	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	-0.3	+0.3	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.3	+0.0	-0.3	+0.6
soil	soil sample 5; outgrowth in LB	+0.5	+0.2	-0.2	-0.2	-0.8
phage	P. simiae OR Antrim MOI 0.1	+0.0	-0.2	+0.3	+0.5	-0.9
phage	P. simiae OR Antrim MOI 1	+0.6	-0.4	+0.4	-0.1	-0.6
carbon source	L-Valine (C)	-0.1	+0.2	-1.1	+0.4	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.3	-0.5	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.6	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	+0.2	-0.0	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.1	+0.4	-0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.0	+0.2	-0.3	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.0	-0.2	+0.1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.3	-0.2	+0.7	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	+0.1	+0.2	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.1	-0.2	+0.1	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.1	-0.1	-0.1	+1.6
stress	Paraquat dichloride 0.008 mg/ml	+0.1	+0.4	+0.9	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.3	-0.3	+0.5	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1	-0.0	-0.1	+0.3	+1.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	+0.5	+0.2	+0.4	+0.8