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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1169 and GFF1170 are separated by 236 nucleotides
GFF1170 and GFF1171 are separated by 34 nucleotides
GFF1171 and GFF1172 are separated by 13 nucleotides
GFF1172 and GFF1173 overlap by 4 nucleotides
GFF1169 - Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6), at 484,558 to 485,322
GFF1169
GFF1170 - Possible hypoxanthine oxidase XdhD (EC 1.-.-.-), at 485,559 to 487,889
GFF1170
GFF1171 - Transcriptional regulator, AraC family, at 487,924 to 488,823
GFF1171
GFF1172 - hypothetical protein, at 488,837 to 489,241
GFF1172
GFF1173 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 489,238 to 490,419
GFF1173
Group
Condition
GFF1169
GFF1170
GFF1171
GFF1172
GFF1173
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.4
-0.5
-1.0
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.5
-0.4
-0.7
-0.6
complex community
Community=arabino-guar; Passage=4
-0.3
-0.4
+0.3
-0.5
-0.8
complex community
Community=Kojac gum; Passage=4
+0.1
-0.4
-0.3
-0.7
-0.3
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.3
-0.1
-0.3
-0.4
complex community
Community=arabino-guar; Passage=4
-0.3
-0.2
+0.1
-0.1
-0.7
complex community
Community=arabino-guar; Passage=4
-0.0
-0.2
+0.4
-0.3
-0.8
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.2
+0.3
-0.2
-0.9
complex community
Community=guar; Passage=4
-0.1
+0.2
-0.4
-0.0
-0.4
phage
phage_bap4
-0.4
-0.1
+0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.3
-0.1
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.2
-0.1
-0.3
+0.0
complex community
Community=guar; Passage=4
+0.0
+0.0
-0.6
+0.5
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.4
-0.2
-0.1
-0.0
complex community
Community=guar; Passage=4
-0.2
-0.3
+0.5
+0.2
-0.7
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
+0.0
-0.6
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.3
+0.1
+0.0
-0.2
phage
phage_bap4
-0.2
-0.0
-0.2
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.2
+0.1
-0.4
-0.0
phage
phage_bap4
-0.0
-0.1
+0.1
-0.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
-0.1
-0.3
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.1
+0.1
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.2
-0.1
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.3
-0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.1
+0.2
-0.1
-0.1
complex community
Community=arabino-guar; Passage=4
-0.1
-0.4
+0.3
+0.6
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.3
+0.1
+0.2
+0.2
no phage control
no phage control
-0.1
+0.1
+0.2
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.1
+0.0
+0.5
-0.2
complex community
Community=guar; Passage=4
-0.1
-0.0
+0.4
+0.3
-0.1
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