Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05900 and PS417_05905 are separated by 255 nucleotidesPS417_05905 and PS417_05910 are separated by 100 nucleotidesPS417_05910 and PS417_05915 are separated by 345 nucleotidesPS417_05915 and PS417_05920 are separated by 63 nucleotides PS417_05900: PS417_05900 - TetR family transcriptional regulator, at 1,310,747 to 1,311,343 _05900 PS417_05905: PS417_05905 - hypothetical protein, at 1,311,599 to 1,311,784 _05905 PS417_05910: PS417_05910 - glucan biosynthesis protein D, at 1,311,885 to 1,313,510 _05910 PS417_05915: PS417_05915 - spermidine dehydrogenase, at 1,313,856 to 1,315,718 _05915 PS417_05920: PS417_05920 - gamma-aminobutyraldehyde dehydrogenase, at 1,315,782 to 1,317,206 _05920
Group Condition PS417_05900 PS417_05905 PS417_05910 PS417_05915 PS417_05920
soil soil sample 3; outgrowth in LB -0.4 -2.4 +0.1 +0.1 -0.3
soil soil sample 5; outgrowth in LB -0.1 -2.6 -0.2 -0.0 +0.4
phage P. simiae Grant Run MOI 0.1 -0.4 -1.9 -0.0 -0.1 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 -0.7 -1.1 +0.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.3 -1.5 -0.1 +0.0 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.5 +0.2 -0.0 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.2 -0.1 +0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.0 +0.1 -0.1 -0.3
carbon source L-Valine (C) +0.2 -2.1 -0.1 +0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.9 +0.1 -0.0 -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.4 +0.2 +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -0.7 +0.1 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -1.3 +0.3 +0.0 -0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 +0.2 -1.0 +0.1 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 +0.3 -0.6 +0.1 +0.3
phage P. simiae ORA MOI 10 +0.3 -0.7 -0.4 +0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.8 +0.3 +0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 -1.1 -0.0 +0.1 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 +0.2 -0.9 +0.3 +0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 +0.7 -0.8 +0.3 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 -0.9 -0.4 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.7 +1.7 -0.0 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 +1.3 -0.2 +0.1 -0.1
solid stress Fraxetin 3 mM; solid stress -0.5 +0.9 +0.1 +0.3 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) +0.8 -0.7 +0.4 +0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.4 -0.4 +0.1 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 -0.3 -0.0 -0.0 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 -0.2 -0.0 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +0.5 +0.3 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.7 +0.1 -0.0 +0.2
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