Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05885 and PS417_05890 are separated by 127 nucleotidesPS417_05890 and PS417_05895 are separated by 47 nucleotidesPS417_05895 and PS417_05900 are separated by 2 nucleotidesPS417_05900 and PS417_05905 are separated by 255 nucleotides PS417_05885: PS417_05885 - potassium transporter Kup, at 1,306,392 to 1,308,293 _05885 PS417_05890: PS417_05890 - oxidoreductase, at 1,308,421 to 1,309,527 _05890 PS417_05895: PS417_05895 - membrane protein, at 1,309,575 to 1,310,744 _05895 PS417_05900: PS417_05900 - TetR family transcriptional regulator, at 1,310,747 to 1,311,343 _05900 PS417_05905: PS417_05905 - hypothetical protein, at 1,311,599 to 1,311,784 _05905
Group Condition PS417_05885 PS417_05890 PS417_05895 PS417_05900 PS417_05905
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.7 N.D. -0.1 -0.4 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.6 N.D. -0.3 +0.2 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.7 N.D. -0.1 -0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.5 N.D. +0.1 -0.1 -1.3
soil soil sample 3; outgrowth in LB -1.1 N.D. +0.2 -0.4 -2.4
soil soil sample 5; outgrowth in LB -0.6 N.D. -0.2 -0.1 -2.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 N.D. -0.1 -0.4 -1.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 N.D. +0.2 -0.5 -1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.8 N.D. -0.0 -0.3 -0.5
carbon source L-Valine (C) -0.4 N.D. -0.2 +0.2 -2.1
solid stress Fraxetin 3 mM; solid stress -2.6 N.D. +0.1 +0.1 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.6 N.D. -0.1 -0.0 -0.6
soil soil sample 8; outgrowth in LB -1.0 N.D. +0.0 -0.4 -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 N.D. +0.0 -0.3 -1.5
solid stress Fraxetin 3 mM; solid stress -2.9 N.D. +0.2 -0.5 +0.9
phage P. simiae Grant Run MOI 0.1 +0.0 N.D. +0.1 -0.4 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. +0.1 -0.5 -1.0
solid stress Fraxetin 2 mM; solid stress -2.2 N.D. +0.1 -0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.0 N.D. +0.1 +0.1 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.9 N.D. +0.1 +0.1 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. +0.4 -0.4 -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -2.0 N.D. -0.1 +0.2 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 N.D. +0.4 -0.0 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.3 N.D. -0.1 -0.1 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 N.D. +0.1 -1.7 +1.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. +0.3 +1.0 -1.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.8 N.D. +0.1 -0.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 N.D. +0.1 +0.5 +1.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +3.0 N.D. +0.1 +0.1 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +4.0 N.D. +0.1 +0.2 -0.6
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