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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1157 and GFF1158 overlap by 14 nucleotides
GFF1158 and GFF1159 overlap by 1 nucleotides
GFF1159 and GFF1160 overlap by 11 nucleotides
GFF1160 and GFF1161 overlap by 14 nucleotides
GFF1157 - IncF plasmid conjugative transfer pilus assembly protein TraE, at 9,630 to 10,196
GFF1157
GFF1158 - IncF plasmid conjugative transfer pilus assembly protein TraK, at 10,183 to 10,923
GFF1158
GFF1159 - IncF plasmid conjugative transfer pilus assembly protein TraB, at 10,923 to 12,344
GFF1159
GFF1160 - IncF plasmid conjugative transfer protein TraP, at 12,334 to 12,930
GFF1160
GFF1161 - IncF plasmid conjugative transfer protein TrbD, at 12,917 to 13,153
GFF1161
Group
Condition
GFF1157
GFF1158
GFF1159
GFF1160
GFF1161
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.3
-0.4
-0.0
-0.2
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
-0.2
-0.1
-0.3
-0.3
N.D.
phage
6F2_phage 15 MOI
-0.4
+0.1
-0.2
-0.4
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.6
-0.1
-0.1
-0.0
N.D.
phage
Ffm_phage 10 MOI; agar plate assay
+0.1
+0.2
-0.4
-0.6
N.D.
lb_plus_sm_buffer
LB_plus_SM_buffer
-0.1
+0.1
-0.0
-0.5
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
+0.1
-0.1
-0.0
-0.5
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.3
+0.1
-0.0
-0.2
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
+0.0
+0.1
-0.0
-0.5
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.2
-0.3
+0.0
-0.3
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.3
+0.2
-0.1
-0.2
N.D.
phage
phi19h1_phage 15 MOI
-0.1
+0.2
-0.1
-0.4
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
-0.4
+0.2
-0.2
+0.1
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 0.01875 MOI
-0.2
+0.3
+0.0
-0.3
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
-0.3
+0.4
-0.1
-0.1
N.D.
micoeukaryotes
Dictyostellum sp.mixed culture-1
-0.2
+0.4
-0.1
-0.1
N.D.
micoeukaryotes
C.elegans, mixed culture-1
-0.1
-0.1
-0.1
+0.3
N.D.
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.4
+0.2
-0.2
+0.4
N.D.
phage
6F2_phage 15 MOI
-0.1
-0.0
-0.1
+0.4
N.D.
phage
LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
+0.1
+0.2
+0.1
-0.3
N.D.
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.2
-0.2
+0.3
-0.2
N.D.
phage
6H2_phage 10 MOI; agar plate assay
-0.4
+0.3
-0.1
+0.3
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.7
-0.4
-0.2
+0.1
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.1
-0.2
+0.6
-0.2
N.D.
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.2
+0.2
-0.0
+0.4
N.D.
phage
LB_plus_SM_buffer with P22_phage 15 MOI
-0.2
+0.2
-0.1
+0.5
N.D.
phage
LB_plus_SM_buffer with phi19h1_phage 15 MOI
+0.2
+0.1
+0.0
+0.4
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
-0.0
+0.1
-0.0
+0.8
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.5
+0.1
-0.1
+0.4
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 1.875 MOI
+0.3
+0.1
+0.1
+0.4
N.D.
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