Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05835 and PS417_05840 are separated by 138 nucleotidesPS417_05840 and PS417_05845 are separated by 75 nucleotidesPS417_05845 and PS417_05850 are separated by 3 nucleotidesPS417_05850 and PS417_05855 are separated by 123 nucleotides PS417_05835: PS417_05835 - hypothetical protein, at 1,298,206 to 1,298,925 _05835 PS417_05840: PS417_05840 - LuxR family transcriptional regulator, at 1,299,064 to 1,299,714 _05840 PS417_05845: PS417_05845 - diacylglycerol kinase, at 1,299,790 to 1,300,152 _05845 PS417_05850: PS417_05850 - LysR family transcriptional regulator, at 1,300,156 to 1,301,082 _05850 PS417_05855: PS417_05855 - ferredoxin-NADP reductase, at 1,301,206 to 1,301,985 _05855
Group Condition PS417_05835 PS417_05840 PS417_05845 PS417_05850 PS417_05855
carbon source L-Valine (C) -0.6 -3.3 N.D. -1.7 N.D.
carbon source octanoate (C) +0.2 -3.1 N.D. -0.3 N.D.
carbon source L-Valine (C) +0.1 -2.2 N.D. -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -0.8 N.D. -2.0 N.D.
carbon source octanoate (C) +0.1 -2.7 N.D. -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.4 N.D. -0.9 N.D.
stress Paraquat dichloride 0.008 mg/ml -0.0 -0.5 N.D. -1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.6 N.D. -0.4 N.D.
carbon source Carbon source L-Citrulline 5 mM +0.1 -1.4 N.D. -0.7 N.D.
carbon source Gly-Glu (C) +0.2 -1.9 N.D. -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.1 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.8 N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -1.6 N.D. -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.8 N.D. -0.7 N.D.
carbon source L-Citrulline (C) +0.1 -0.8 N.D. -1.0 N.D.
carbon source Carbon source L-Citrulline 10 mM +0.2 -0.9 N.D. -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -1.5 N.D. +0.1 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 -1.9 N.D. +0.2 N.D.
carbon source pyruvate (C) +0.2 -1.1 N.D. -0.5 N.D.
carbon source Ethanol (C) +0.1 -1.5 N.D. +0.2 N.D.
carbon source Gly-Glu (C) +0.2 -1.6 N.D. +0.2 N.D.
stress Paraquat dichloride 0.002 mg/ml +0.1 +0.4 N.D. -1.5 N.D.
carbon source acetate (C) +0.2 -1.5 N.D. +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.4 N.D. -1.1 N.D.
soil soil sample 6; outgrowth in LB -0.1 -1.2 N.D. +0.8 N.D.
soil soil sample 7; outgrowth in LB +0.5 -1.1 N.D. +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 +1.1 N.D. -1.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.0 +1.2 N.D. +0.5 N.D.
stress Thallium(I) acetate 0.0625 mg/ml -0.1 +1.1 N.D. +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.9 N.D. +0.5 N.D.
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