Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05795	PS417_05800	PS417_05805	PS417_05810	PS417_05815
stress	Cisplatin 0.01 mg/ml	+0.4	-0.1	N.D.	-0.5	-5.3
stress	Lomefloxacin 0.0001 mM	+0.0	+0.0	N.D.	+0.1	-5.6
stress	methylglyoxal 0.032 vol%	-0.2	+0.0	N.D.	+0.1	-5.2
stress	Nalidixic 0.025 mg/ml	-0.1	+0.0	N.D.	+0.3	-4.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.3	N.D.	-0.1	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.4	N.D.	+0.1	-3.4
soil	soil sample 4; outgrowth in LB	-0.3	+0.6	N.D.	-0.0	-3.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	N.D.	-0.4	-3.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	N.D.	-0.4	-3.3
stress	Chlorite 4 mM	-0.2	-0.1	N.D.	-0.0	-3.2
stress	Nalidixic 0.015 mg/ml	-0.0	+0.0	N.D.	+0.1	-3.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.2	N.D.	+0.1	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	N.D.	-0.7	-2.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.5	N.D.	+0.1	-3.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	+0.1	N.D.	-0.1	-3.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	N.D.	-0.4	-2.6
motility	inner cut, LB soft agar motility assay	+0.1	-0.0	N.D.	+0.1	-3.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	N.D.	+0.3	-3.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.0	N.D.	+0.1	-3.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	N.D.	-0.2	-2.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	N.D.	-0.7	-1.8
seeds	Growth on radish seeds for 72 hours	-0.3	+0.2	N.D.	+0.3	-2.6
soil	soil sample 5; outgrowth in LB	+0.0	+0.4	N.D.	-0.1	-2.5
carbon source	L-Histidine (C)	-0.1	+0.1	N.D.	+0.4	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.3	N.D.	+0.4	-2.6
root	root sample 6; outgrowth in LB	+0.4	-0.5	N.D.	+0.4	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.3	N.D.	+0.7	-1.7
phage	Wcs_1	+0.1	+0.6	N.D.	-0.0	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.9	N.D.	-0.1	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.2	N.D.	+1.7	-1.1