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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1131 and GFF1132 are separated by 3 nucleotides
GFF1132 and GFF1133 overlap by 23 nucleotides
GFF1133 and GFF1134 are separated by 17 nucleotides
GFF1134 and GFF1135 overlap by 14 nucleotides
GFF1131 - putative fatty acid desaturase, at 447,490 to 448,398
GFF1131
GFF1132 - 3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41), at 448,402 to 450,327
GFF1132
GFF1133 - FIG00431745: hypothetical protein, at 450,305 to 451,222
GFF1133
GFF1134 - FIG00931167: hypothetical protein, at 451,240 to 451,611
GFF1134
GFF1135 - hypothetical protein, at 451,598 to 451,828
GFF1135
Group
Condition
GFF1131
GFF1132
GFF1133
GFF1134
GFF1135
complex community
Community=arabino-guar; Passage=4
+0.4
-0.0
+0.0
-0.2
-2.0
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.2
-0.6
+0.2
-0.6
complex community
Community=Kojac gum; Passage=4
-0.2
-0.1
+0.0
+0.0
-0.5
complex community
Community=arabino-guar; Passage=4
-0.1
-0.1
-0.2
+0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.1
+0.0
+0.1
-0.6
complex community
Community=arabino-guar; Passage=4
-0.1
-0.0
+0.2
+0.3
-0.8
complex community
Community=guar; Passage=4
-0.4
+0.1
+0.0
+0.2
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.0
-0.6
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.0
-0.0
+0.2
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.1
-0.2
+0.3
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.0
-0.1
+0.4
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.1
-0.1
+0.3
-0.3
phage
phage_bap4
-0.0
+0.0
+0.1
+0.2
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.0
-0.2
+0.2
-0.1
phage
phage_bap4
-0.2
-0.0
+0.1
+0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
-0.1
-0.3
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.1
-0.0
+0.4
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.1
-0.0
+0.2
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.0
-0.3
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.0
+0.0
+0.5
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.1
-0.2
+0.3
+0.4
phage
phage_bap4
+0.0
-0.0
-0.1
+0.4
+0.4
phage
phage_bap4
-0.1
+0.1
+0.2
+0.5
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.1
+0.1
+0.1
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.1
+0.1
+0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.1
+0.0
+0.4
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.1
+0.2
+0.2
+0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
+0.2
+0.5
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
+0.1
+0.4
+0.3
complex community
Community=arabino-guar; Passage=4
+0.7
+0.4
-0.5
+0.3
+0.7
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