Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_05695	PS417_05705	PS417_05710	PS417_05715	PS417_05720
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.6	-0.3	-0.6	-0.2	N.D.
seeds	Growth on radish seeds for 72 hours	-0.6	-0.6	-1.5	+0.1	N.D.
stress	Cisplatin 0.01 mg/ml	-3.7	+1.0	-0.8	+1.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.4	-0.4	-0.3	N.D.
phage	JP1 MOI 1	-1.6	+0.2	-0.7	-0.1	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-2.3	+0.1	+0.1	-0.1	N.D.
stress	methylglyoxal 0.032 vol%	-2.8	+0.4	+0.0	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.7	-0.1	-0.3	+0.1	N.D.
stress	Nalidixic 0.025 mg/ml	-1.6	+0.4	-0.6	+0.0	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	-1.5	+0.3	-0.3	-0.3	N.D.
stress	Lomefloxacin 0.0001 mM	-1.9	+0.1	+0.1	-0.1	N.D.
stress	Cobalt chloride 0.16 mM	-2.3	+0.4	+0.0	+0.1	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-1.4	-0.5	+0.5	-0.0	N.D.
solid stress	80% Methanol 3 mM; solid stress	-1.7	+0.5	-0.1	-0.2	N.D.
soil	soil sample 7; outgrowth in LB	-1.0	-0.8	+0.2	+0.3	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-1.5	-0.2	+0.8	-0.2	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.4	-0.2	+0.8	-0.0	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-1.2	-0.2	+0.7	+0.0	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-1.0	-0.4	+0.6	+0.2	N.D.
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.4	-0.1	+0.8	-0.0	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-1.2	-0.2	+0.7	+0.1	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-1.0	-0.4	+0.9	-0.1	N.D.
carbon source	RCH2_defined_glucose with MS_media 1x	-1.1	-0.1	+0.9	-0.1	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-1.1	-0.2	+0.8	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.2	+0.4	+0.5	+0.2	N.D.
stress	Choline chloride 300 mM	-0.8	-0.4	+0.9	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+0.6	+1.3	+0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	-0.2	-0.6	+0.4	N.D.
phage	Wcs_1	+1.8	-0.1	-0.0	-0.2	N.D.
phage	P. simiae OR1 MOI 0.1	+1.6	-0.3	+1.2	-0.2	N.D.