Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05675	PS417_05680	PS417_05685	PS417_05690	PS417_05695
stress	Cisplatin 0.01 mg/ml	N.D.	+0.3	-0.0	-0.4	-3.7
stress	methylglyoxal 0.032 vol%	N.D.	+0.8	-0.9	+0.4	-2.8
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.1	+0.1	-0.1	-2.3
stress	Cobalt chloride 0.16 mM	N.D.	+0.3	-0.2	-0.0	-2.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-0.1	-0.3	-0.1	-1.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	N.D.	-0.2	-0.2	-0.0	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.1	+0.1	-1.7
stress	Lomefloxacin 0.0001 mM	N.D.	+0.1	+0.1	-0.2	-1.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	-0.1	-0.3	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.3	-0.2	-1.6
stress	Nalidixic 0.025 mg/ml	N.D.	+0.2	-0.1	-0.0	-1.6
solid stress	80% Methanol 3 mM; solid stress	N.D.	+0.1	-0.0	+0.1	-1.7
stress	Tetracycline 0.001 mg/ml	N.D.	+0.2	+0.2	-0.3	-1.5
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	-0.6	+0.4	-0.9
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.4	+0.3	+0.0	-1.2
phage	JP1 MOI 1	N.D.	+0.3	-0.1	+0.4	-1.6
stress	Gentamicin 0.008 mg/ml	N.D.	+1.2	-0.3	-0.4	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-0.2	+0.5	-1.0
stress	Nalidixic 0.015 mg/ml	N.D.	+0.2	+0.1	+0.1	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-0.5	-0.7	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+0.2	+0.1	-1.3
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+1.0	-0.0	-0.1	-1.5
stress	Neomycin 0.04 mg/ml	N.D.	+0.7	-0.1	+0.2	-0.9
liquid stress	80% Methanol 3 mM; liquid stress	N.D.	+0.4	+0.2	+0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.2	-0.4	+0.9	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+1.3	-0.4	+0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.1	+0.5	+1.2
phage	Wcs_0.1	N.D.	+0.2	+0.8	+0.1	+0.9
phage	P. simiae OR1 MOI 0.1	N.D.	+0.1	-0.1	+0.6	+1.6
phage	Wcs_1	N.D.	+0.2	+0.4	+0.2	+1.8