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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1119 and GFF1120 are separated by 65 nucleotides
GFF1120 and GFF1121 are separated by 22 nucleotides
GFF1121 and GFF1122 are separated by 4 nucleotides
GFF1122 and GFF1123 overlap by 4 nucleotides
GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620
GFF1119
GFF1120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 436,686 to 437,141
GFF1120
GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474
GFF1121
GFF1122 - Molybdenum cofactor guanylyltransferase (EC 2.7.7.77), at 438,479 to 439,138
GFF1122
GFF1123 - GTP 3',8-cyclase (EC 4.1.99.22), at 439,135 to 440,292
GFF1123
Group
Condition
GFF1119
GFF1120
GFF1121
GFF1122
GFF1123
phage
phage_bap4
-2.4
-0.5
-0.2
+0.1
+0.0
phage
phage_bap4
-2.3
-0.3
+0.1
-0.3
+0.1
no phage control
no phage control
-1.8
-0.6
-0.1
-0.2
+0.0
phage
phage_bap4
-2.0
-0.3
+0.0
-0.2
-0.1
phage
phage_bap4
-1.5
-0.4
-0.4
-0.0
-0.1
phage
phage_bap4
-2.1
-0.0
-0.1
-0.0
-0.0
phage
phage_bap4
-2.0
-0.1
-0.1
+0.1
-0.1
phage
phage_bap4
-2.4
+0.1
+0.1
-0.1
-0.0
no phage control
no phage control
-1.9
-0.2
+0.2
-0.0
-0.0
phage
phage_bap4
-1.5
-0.3
-0.0
-0.1
-0.1
no phage control
no phage control
-1.6
+0.0
-0.0
-0.1
-0.1
phage
phage_bap4
-1.6
+0.0
-0.2
-0.0
+0.0
no phage control
no phage control
-1.7
+0.2
-0.0
+0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.7
-0.3
-0.3
-0.2
+0.1
complex community
Community=guar; Passage=4
-0.2
-1.1
+0.2
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.7
-0.5
-0.1
+0.0
+0.1
phage
phage_bap4
-1.3
+0.1
+0.0
-0.1
+0.0
phage
phage_bap4
-1.4
+0.3
-0.1
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
-0.0
-0.2
-0.2
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.0
-1.5
+0.2
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.7
-0.4
-0.1
+0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.6
-0.5
-0.1
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
-0.6
+0.2
+0.0
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.5
+0.2
-0.6
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.7
-0.4
+0.2
-0.0
+0.1
complex community
Community=arabino-guar; Passage=4
-0.2
+0.1
-0.5
-0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.4
-1.3
+0.2
+0.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.3
+0.0
-0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.8
+0.5
-0.2
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.2
+0.4
+0.4
-0.3
-0.0
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