Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00555	PS417_00560	PS417_00565	PS417_00570	PS417_00575
carbon source	L-Valine (C)	-0.2	-0.9	-1.0	-1.5	-0.1
carbon source	L-Valine (C)	-0.1	-1.1	-0.8	-0.7	-0.5
carbon source	a-Ketoglutaric (C)	-0.0	-0.7	-0.8	-0.9	-0.1
carbon source	a-Ketoglutaric (C)	+0.1	-0.8	-0.9	-0.9	+0.1
phage	JP1 MOI 10	+0.1	-0.3	-0.9	-0.4	-0.4
carbon source	L-Histidine (C)	-0.1	-0.5	-0.8	-0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.0	-0.8	+0.1	-0.4
carbon source	L-Histidine (C)	-0.2	-0.4	-0.5	-0.7	+0.4
carbon source	D-Galacturonic Acid (C)	-0.0	-0.4	-0.7	-0.6	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.3	-1.1	-0.2	+0.1
stress	methylglyoxal 0.032 vol%	-0.0	-0.1	-0.6	-0.7	+0.3
carbon source	Carbon source L-Citrulline 10 mM	+0.3	-0.4	-0.8	-0.4	+0.1
soil	soil sample 5; outgrowth in LB	-0.1	+0.2	-1.3	+0.1	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.1	-0.7	-0.3	+0.7
phage	P. simiae Grant Run MOI 0.1	+0.5	-0.1	+0.3	-0.8	+0.2
seeds	Growth on radish seeds for 72 hours	-0.3	+0.5	-0.6	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	-0.5	+1.2	-0.1
soil	soil sample 2; outgrowth in LB	+0.6	+0.1	+0.3	-1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	+0.6	-0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.3	+0.4	-0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	-0.7	+0.8	+0.6
soil	soil sample 3; outgrowth in LB	+0.5	+0.1	+0.5	-0.5	+0.4
soil	soil sample 4; outgrowth in LB	+0.5	+0.2	-0.4	+0.2	+0.6
soil	soil sample 6; outgrowth in LB	+0.0	-0.2	+0.6	+0.6	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	+0.4	+0.4	+0.4	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.5	+0.0	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.1	+0.1	+0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.3	-0.4	+1.2	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.5	-0.1	+0.7	+0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.4	+0.9	+0.5