Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05610 and PS417_05615 are separated by 201 nucleotidesPS417_05615 and PS417_05620 are separated by 244 nucleotidesPS417_05620 and PS417_05625 are separated by 106 nucleotidesPS417_05625 and PS417_05630 overlap by 4 nucleotides PS417_05610: PS417_05610 - bacterioferritin, at 1,263,068 to 1,263,538 _05610 PS417_05615: PS417_05615 - (2Fe-2S)-binding protein, at 1,263,740 to 1,263,958 _05615 PS417_05620: PS417_05620 - alkyl hydroperoxide reductase, at 1,264,203 to 1,264,805 _05620 PS417_05625: PS417_05625 - ribonuclease T, at 1,264,912 to 1,265,583 _05625 PS417_05630: PS417_05630 - dihydroorotase, at 1,265,580 to 1,266,626 _05630
Group Condition PS417_05610 PS417_05615 PS417_05620 PS417_05625 PS417_05630
solid stress Fraxetin 3 mM; solid stress -2.3 -0.9 -0.3 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -2.0 -0.9 -0.5 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -1.0 -1.5 -0.7 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -1.7 -0.9 -0.2 N.D. N.D.
soil soil sample 3; outgrowth in LB -1.9 -0.2 -0.2 N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.0 -0.6 -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -0.1 -0.2 N.D. N.D.
soil soil sample 5; outgrowth in LB -0.7 -0.6 -0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 -0.6 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.6 -0.5 +0.4 N.D. N.D.
soil soil sample 4; outgrowth in LB -1.1 -0.3 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -0.1 -0.3 N.D. N.D.
soil soil sample 8; outgrowth in LB -1.0 -0.1 -0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 -0.3 N.D. N.D.
soil soil sample 6; outgrowth in LB -0.3 -0.6 -0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.1 -0.2 N.D. N.D.
soil soil sample 2; outgrowth in LB -1.4 +0.3 -0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 +0.0 -0.1 N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -0.6 -0.5 -0.1 N.D. N.D.
carbon source L-Valine (C) -1.1 +0.0 -0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.3 -0.7 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.9 +0.4 -0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 +0.2 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 -0.8 -0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.6 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.0 +0.0 +0.6 N.D. N.D.
stress Phosphomycin 0.001 mg/ml +0.6 -0.5 -0.3 N.D. N.D.
phage JP1 MOI 10 +0.6 +0.6 -0.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.5 -0.3 +0.5 N.D. N.D.
stress Cobalt chloride 0.16 mM +1.7 +0.1 +0.2 N.D. N.D.
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