Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05600	PS417_05605	PS417_05610	PS417_05615	PS417_05620
solid stress	Fraxetin 3 mM; solid stress	-0.0	N.D.	-2.3	-0.9	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.0	N.D.	-2.0	-0.9	-0.5
solid stress	Fraxetin 3 mM; solid stress	-0.0	N.D.	-1.0	-1.5	-0.7
solid stress	Fraxetin 3 mM; solid stress	+0.1	N.D.	-1.7	-0.9	-0.2
soil	soil sample 3; outgrowth in LB	-0.1	N.D.	-1.9	-0.2	-0.2
solid stress	Fraxetin 2 mM; solid stress	-0.1	N.D.	-1.0	-0.6	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-1.7	-0.1	-0.2
soil	soil sample 5; outgrowth in LB	-0.0	N.D.	-0.7	-0.6	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-1.1	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-0.8	-0.4	-0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.0	N.D.	-1.6	-0.5	+0.4
soil	soil sample 6; outgrowth in LB	-0.1	N.D.	-0.3	-0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	-0.8	-0.4	-0.3
soil	soil sample 4; outgrowth in LB	+0.1	N.D.	-1.1	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-1.2	+0.0	-0.1
carbon source	L-Valine (C)	-0.2	N.D.	-1.1	+0.0	-0.2
soil	soil sample 2; outgrowth in LB	-0.1	N.D.	-1.4	+0.3	-0.1
soil	soil sample 8; outgrowth in LB	+0.1	N.D.	-1.0	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-1.2	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-0.8	+0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	N.D.	-0.6	+0.2	-0.6
seeds	Growth on radish seeds for 72 hours	+0.0	N.D.	-0.9	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	+0.5	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	N.D.	-1.0	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	N.D.	+0.5	-0.8	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	N.D.	+0.5	+0.3	-0.4
phage	P. simiae OR Antrim MOI 1	-0.3	N.D.	+0.9	+0.3	+0.0
phage	JP1 MOI 10	+0.1	N.D.	+0.6	+0.6	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	N.D.	+1.5	-0.3	+0.5
stress	Cobalt chloride 0.16 mM	-0.1	N.D.	+1.7	+0.1	+0.2