Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05545	PS417_05550	PS417_05555	PS417_05560	PS417_05565
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-1.1	-0.6	-1.2	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.0	-0.1	-2.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-1.1	-1.2	+0.2	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-1.4	-1.7	+1.5	N.D.
phage	JP1 MOI 10	+0.1	-0.0	-0.4	-2.3	N.D.
carbon source	L-Histidine (C)	-0.5	-1.0	-0.1	-0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.0	-0.7	-1.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.6	-1.1	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.6	-1.0	-0.2	N.D.
phage	JP1 MOI 0.1	+0.3	-0.2	-1.6	-0.9	N.D.
seeds	Growth on radish seeds for 72 hours	-0.9	+0.3	+0.2	-1.8	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.7	-0.8	+0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.4	+0.1	+0.4	N.D.
soil	soil sample 6; outgrowth in LB	-0.6	+0.5	-1.6	+0.3	N.D.
stress	Gentamicin 0.008 mg/ml	-0.0	-0.5	-1.4	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-0.5	+0.6	-1.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.6	+0.2	-2.0	N.D.
soil	soil sample 5; outgrowth in LB	-0.0	+0.6	+0.4	-1.7	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.8	+0.5	-1.7	N.D.
seeds	Growth on radish seeds for 72 hours	-0.2	+0.8	+0.3	-1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.0	-0.3	-0.2	+1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.4	+0.1	+1.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	+0.4	+1.5	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	+0.5	+0.8	+0.8	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.8	+0.5	+0.5	+0.6	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+1.0	+0.9	+0.4	N.D.
nitrogen source	Urea (N)	+0.4	+0.7	+0.9	+0.7	N.D.
nitrogen source	Inosine (N)	+0.6	+0.7	+1.2	+0.8	N.D.
carbon source	L-Glutamine (C)	+2.7	+2.8	+2.8	+2.6	N.D.
carbon source	L-Glutamine (C)	+2.9	+2.5	+2.9	+3.0	N.D.