Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05540	PS417_05545	PS417_05550	PS417_05555	PS417_05560
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-1.3	-1.1	-0.6	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-1.3	-0.0	-0.1	-2.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-1.4	-1.1	-1.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.5	-0.0	-0.7	-1.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	-0.5	-0.7	-0.3	-0.6
phage	JP1 MOI 0.1	-0.2	+0.3	-0.2	-1.6	-0.9
phage	JP1 MOI 1	-0.4	-0.3	-0.7	-0.7	-0.5
phage	JP1 MOI 10	+0.0	+0.1	-0.0	-0.4	-2.3
seeds	Growth on radish seeds for 72 hours	-0.2	-0.9	+0.3	+0.2	-1.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.7	-0.6	-1.0	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.9	-1.4	-1.7	+1.5
soil	soil sample 6; outgrowth in LB	-0.3	-0.6	+0.5	-1.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.4	+0.6	+0.2	-2.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	-0.7	-0.8	+0.6
stress	Gentamicin 0.008 mg/ml	+0.3	-0.0	-0.5	-1.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.5	-1.4	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.0	-0.5	+0.6	-1.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.5	-0.8	-0.5	+0.4
soil	soil sample 5; outgrowth in LB	-0.2	-0.0	+0.6	+0.4	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.0	+0.8	+0.5	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	+0.4	+0.1	+1.5
nitrogen source	Urea (N)	-1.1	+0.4	+0.7	+0.9	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+1.0	-0.3	-0.2	+1.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.3	+0.5	+0.8	+0.8
nitrogen source	Inosine (N)	-1.0	+0.6	+0.7	+1.2	+0.8
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.3	+1.0	+0.9	+0.4
carbon source	Trisodium citrate (C)	+5.0	-0.0	-0.1	-0.3	-0.2
carbon source	Trisodium citrate (C)	+5.0	-0.2	-0.3	-0.1	+0.2
carbon source	L-Glutamine (C)	+2.0	+2.7	+2.8	+2.8	+2.6
carbon source	L-Glutamine (C)	+1.9	+2.9	+2.5	+2.9	+3.0