Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05535	PS417_05540	PS417_05545	PS417_05550	PS417_05555
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.9	-0.7	-1.3	-1.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-4.0	-0.1	-0.7	-0.1	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-3.6	-0.2	-0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.2	-0.3	-0.1	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.6	-0.1	-0.2	-0.2	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	+0.1	-0.6	-0.7	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.0	-1.4	-1.1	-1.2
phage	P. simiae OR Antrim MOI 10	-1.4	-0.1	-0.8	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.4	+0.0	-0.4	-0.1	-0.3
carbon source	L-Asparagine (C)	-1.3	-0.3	-0.7	-0.4	-0.4
seeds	Growth on radish seeds for 72 hours	-2.5	-0.2	-0.9	+0.3	+0.2
phage	P. simiae Grant Run MOI 10	-2.9	-0.1	-1.0	+0.3	+0.6
solid stress	Fraxetin 3 mM; solid stress	-2.5	-0.1	-0.2	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.8	-0.1	-0.0	+0.1	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.5	-0.9	-1.4	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-0.3	-0.3	+0.3	-0.1
carbon source	L-Valine (C)	-1.9	-0.4	+0.3	-0.6	+0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.2	+0.4	+0.0	-0.6	-0.8
soil	soil sample 6; outgrowth in LB	-0.1	-0.3	-0.6	+0.5	-1.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.3	-0.7	-0.6	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.4	-0.5	-1.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	-0.5	-0.5	-0.0	-0.7
stress	Gentamicin 0.008 mg/ml	+2.1	+0.3	-0.0	-0.5	-1.4
nitrogen source	Urea (N)	+0.8	-1.1	+0.4	+0.7	+0.9
nitrogen source	Inosine (N)	+0.4	-1.0	+0.6	+0.7	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.9	+0.2	-0.1	+0.4	+0.4
carbon source	Trisodium citrate (C)	-0.3	+5.0	-0.2	-0.3	-0.1
carbon source	Trisodium citrate (C)	-0.4	+5.0	-0.0	-0.1	-0.3
carbon source	L-Glutamine (C)	+2.8	+1.9	+2.9	+2.5	+2.9
carbon source	L-Glutamine (C)	+2.8	+2.0	+2.7	+2.8	+2.8