Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05480 and PS417_05485 overlap by 4 nucleotidesPS417_05485 and PS417_05490 are separated by 80 nucleotidesPS417_05490 and PS417_05495 are separated by 55 nucleotidesPS417_05495 and PS417_05500 are separated by 228 nucleotides PS417_05480: PS417_05480 - transporter, at 1,234,465 to 1,234,845 _05480 PS417_05485: PS417_05485 - transporter, at 1,234,842 to 1,235,246 _05485 PS417_05490: PS417_05490 - fatty acid desaturase, at 1,235,327 to 1,236,199 _05490 PS417_05495: PS417_05495 - structural protein MipA, at 1,236,255 to 1,237,025 _05495 PS417_05500: PS417_05500 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 1,237,254 to 1,237,955 _05500
Group Condition PS417_05480 PS417_05485 PS417_05490 PS417_05495 PS417_05500
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. -0.1 -0.7 -4.2
stress Tetracycline 0.001 mg/ml N.D. N.D. +0.3 -0.5 -3.0
stress Polymyxin B sulfate 0.006 mg/ml N.D. N.D. +0.1 -0.4 -2.5
stress Neomycin 0.04 mg/ml N.D. N.D. +0.8 -0.9 -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 -0.4 -1.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.1 +0.0 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.3 -0.1 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.0 -0.5 -1.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.2 -0.8 -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.1 -0.3 -1.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. +0.4 -0.2 -1.9
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +0.1 +0.2 -2.0
stress Gentamicin 0.008 mg/ml N.D. N.D. +0.3 +0.2 -2.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. +0.1 +0.1 -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.1 -0.1 -1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.1 +0.1 -1.5
carbon source Trisodium citrate (C) N.D. N.D. +0.4 -0.2 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.1 -1.5
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. +0.2 +0.5 -1.6
phage JP1 MOI 1 N.D. N.D. +0.2 +0.3 -1.2
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +0.5 +0.4 -1.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.7 +0.8 -0.4
phage JP1 MOI 0.1 N.D. N.D. -0.3 +0.8 +1.2
carbon source L-Valine (C) N.D. N.D. -0.1 +0.6 +1.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.1 +0.2 +1.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.0 -0.1 +2.0
carbon source L-Valine (C) N.D. N.D. +0.0 +0.4 +1.5
carbon source octanoate (C) N.D. N.D. -0.0 +0.9 +1.1
phage JP1 MOI 10 N.D. N.D. +0.5 +1.0 +0.6
carbon source octanoate (C) N.D. N.D. +0.1 +1.0 +1.5
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PS417_05480
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PS417_05485
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