Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05475 and PS417_05480 overlap by 4 nucleotidesPS417_05480 and PS417_05485 overlap by 4 nucleotidesPS417_05485 and PS417_05490 are separated by 80 nucleotidesPS417_05490 and PS417_05495 are separated by 55 nucleotides PS417_05475: PS417_05475 - arginase, at 1,233,548 to 1,234,468 _05475 PS417_05480: PS417_05480 - transporter, at 1,234,465 to 1,234,845 _05480 PS417_05485: PS417_05485 - transporter, at 1,234,842 to 1,235,246 _05485 PS417_05490: PS417_05490 - fatty acid desaturase, at 1,235,327 to 1,236,199 _05490 PS417_05495: PS417_05495 - structural protein MipA, at 1,236,255 to 1,237,025 _05495
Group Condition PS417_05475 PS417_05480 PS417_05485 PS417_05490 PS417_05495
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 N.D. N.D. -0.5 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. N.D. -0.2 -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. N.D. -0.3 -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 N.D. N.D. -0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. N.D. -0.1 -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.8 N.D. N.D. -0.1 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.2 N.D. N.D. -0.2 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.9 N.D. N.D. +0.0 -0.6
soil soil sample 6; outgrowth in LB -1.7 N.D. N.D. +0.0 +0.3
soil soil sample 3; outgrowth in LB -1.5 N.D. N.D. +0.2 +0.6
carbon source 2'-Deoxyinosine 5 mM (C) -1.2 N.D. N.D. -0.1 +0.6
stress Neomycin 0.04 mg/ml +0.5 N.D. N.D. +0.8 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 N.D. N.D. -0.1 -0.2
seeds Growth on radish seeds for 72 hours +1.0 N.D. N.D. -0.5 +0.5
carbon source Trisodium citrate (C) +1.0 N.D. N.D. +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 N.D. N.D. +0.1 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.4 N.D. N.D. +0.1 -0.0
carbon source octanoate (C) +0.6 N.D. N.D. -0.0 +0.9
stress Gentamicin 0.008 mg/ml +1.1 N.D. N.D. +0.3 +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.4 N.D. N.D. +0.1 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.5 N.D. N.D. +0.4 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.2 N.D. N.D. +0.2 +0.5
carbon source octanoate (C) +0.8 N.D. N.D. +0.1 +1.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.6 N.D. N.D. +0.1 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.7 N.D. N.D. +0.1 +0.0
phage JP1 MOI 10 +0.5 N.D. N.D. +0.5 +1.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.7 N.D. N.D. +0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +2.1 N.D. N.D. +0.3 -0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.6 N.D. N.D. +0.4 +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml +2.2 N.D. N.D. +0.7 +0.8
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PS417_05475
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PS417_05480
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PS417_05490
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PS417_05495
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