Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05470 and PS417_05475 are separated by 82 nucleotidesPS417_05475 and PS417_05480 overlap by 4 nucleotidesPS417_05480 and PS417_05485 overlap by 4 nucleotidesPS417_05485 and PS417_05490 are separated by 80 nucleotides PS417_05470: PS417_05470 - DSBA oxidoreductase, at 1,232,812 to 1,233,465 _05470 PS417_05475: PS417_05475 - arginase, at 1,233,548 to 1,234,468 _05475 PS417_05480: PS417_05480 - transporter, at 1,234,465 to 1,234,845 _05480 PS417_05485: PS417_05485 - transporter, at 1,234,842 to 1,235,246 _05485 PS417_05490: PS417_05490 - fatty acid desaturase, at 1,235,327 to 1,236,199 _05490
Group Condition PS417_05470 PS417_05475 PS417_05480 PS417_05485 PS417_05490
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.0 -1.8 N.D. N.D. -0.1
supernatant control Vogels_fungal_media 0.1X -0.6 -1.2 N.D. N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -1.2 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.5 N.D. N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.8 -1.1 N.D. N.D. +0.2
soil soil sample 3; outgrowth in LB -0.3 -1.5 N.D. N.D. +0.2
phage P. simiae ORA MOI 0.1 -1.0 -0.5 N.D. N.D. +0.1
soil soil sample 6; outgrowth in LB +0.5 -1.7 N.D. N.D. +0.0
soil soil sample 7; outgrowth in LB -0.5 -0.9 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -1.2 N.D. N.D. -0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.7 N.D. N.D. -0.4
carbon source L-Valine (C) -1.1 +0.5 N.D. N.D. +0.0
phage P. simiae Grant Run MOI 0.1 +0.6 -0.9 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -0.7 N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +1.2 N.D. N.D. -0.1
seeds Growth on radish seeds for 72 hours +0.4 +1.0 N.D. N.D. -0.5
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 +1.2 N.D. N.D. +0.2
stress Neomycin 0.04 mg/ml -0.2 +0.5 N.D. N.D. +0.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 +1.4 N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.9 +2.1 N.D. N.D. +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 +1.6 N.D. N.D. +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 +1.5 N.D. N.D. +0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 +1.1 N.D. N.D. +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +1.4 N.D. N.D. +0.1
stress Gentamicin 0.008 mg/ml +0.5 +1.1 N.D. N.D. +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.0 +1.6 N.D. N.D. +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.0 +1.7 N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.4 N.D. N.D. +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +1.7 N.D. N.D. +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 +2.2 N.D. N.D. +0.7
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PS417_05470
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PS417_05475
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