Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05465 and PS417_05470 are separated by 55 nucleotidesPS417_05470 and PS417_05475 are separated by 82 nucleotidesPS417_05475 and PS417_05480 overlap by 4 nucleotidesPS417_05480 and PS417_05485 overlap by 4 nucleotides PS417_05465: PS417_05465 - alpha/beta hydrolase, at 1,231,737 to 1,232,756 _05465 PS417_05470: PS417_05470 - DSBA oxidoreductase, at 1,232,812 to 1,233,465 _05470 PS417_05475: PS417_05475 - arginase, at 1,233,548 to 1,234,468 _05475 PS417_05480: PS417_05480 - transporter, at 1,234,465 to 1,234,845 _05480 PS417_05485: PS417_05485 - transporter, at 1,234,842 to 1,235,246 _05485
Group Condition PS417_05465 PS417_05470 PS417_05475 PS417_05480 PS417_05485
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.1 -0.8 -1.1 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -0.1 -0.6 -1.2 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 -0.4 -1.2 N.D. N.D.
soil soil sample 3; outgrowth in LB -0.1 -0.3 -1.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -0.0 -1.8 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 -0.5 -0.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.2 -0.5 N.D. N.D.
phage P. simiae ORA MOI 0.1 -0.0 -1.0 -0.5 N.D. N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.0 -0.0 -1.4 N.D. N.D.
phage P. simiae OR Antrim MOI 1 -0.7 +0.1 -0.8 N.D. N.D.
soil soil sample 6; outgrowth in LB -0.1 +0.5 -1.7 N.D. N.D.
phage P. simiae Grant Run MOI 10 -0.4 +0.5 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.6 -0.8 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.1 +0.6 -0.9 N.D. N.D.
carbon source L-Valine (C) +0.5 -1.1 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.9 -1.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.7 -0.7 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 -0.2 +1.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 -0.9 +2.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.1 -0.2 +1.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 -0.1 +1.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 -0.2 +1.5 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 +0.5 +1.1 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.1 +0.5 +1.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +0.4 +1.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +0.0 +1.7 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 +0.0 +1.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 +1.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 +0.5 +1.7 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.1 +0.8 +2.2 N.D. N.D.
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