Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05440	PS417_05445	PS417_05450	PS417_05455	PS417_05460
seeds	Growth on radish seeds for 72 hours	-0.1	-1.7	-0.6	+0.1	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	-0.5	-1.1	-0.1
carbon source	succinate (C)	+0.0	-0.9	+0.3	-1.4	-0.0
carbon source	L-Malic (C)	+0.0	-0.5	+0.4	-1.8	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	+0.0	+0.0	-2.2	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	+0.3	+0.1	-2.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-1.8	+0.3	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.6	-0.2	-1.2	+0.0
nophagecontrol	TIme6-nophage	+0.2	-1.4	+0.2	-0.6	+0.0
motility	inner cut, LB soft agar motility assay	-0.0	-2.1	+0.1	+0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	-0.8	+0.2	-1.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	+0.0	-1.7	-0.1
seeds	Growth on radish seeds for 72 hours	+0.7	-1.7	+0.4	-0.5	+0.0
carbon source	L-Glutamine (C)	-0.2	+0.7	-0.2	-1.4	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-1.3	-0.2	+0.8	+0.1
phage	P. simiae ORA MOI 0.1	+0.3	-1.4	-0.4	+0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	+0.6	+0.0	-1.6	+0.0
soil	soil sample 3; outgrowth in LB	-0.5	-1.5	+0.4	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-1.7	+0.5	+0.0	+0.0
nitrogen source	Ammonium chloride (N)	+0.1	+0.6	+0.3	-1.5	+0.0
supernatant control	Vogels_fungal_media 0.1X	+0.4	+0.2	+0.3	-1.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.6	+0.4	-0.8	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-1.2	+0.6	+0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.0	-0.4	-1.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.8	-0.3	-1.0	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+1.1	+0.2	-0.9	+0.1
carbon source	L-Valine (C)	-0.6	+0.7	+1.0	-0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+1.5	-0.0	-1.0	+0.2
carbon source	Trisodium citrate (C)	+0.1	+0.7	+0.1	+1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+3.3	+0.4	+0.3	-0.1