Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05415	PS417_05420	PS417_05425	PS417_05430	PS417_05435
stress	methylglyoxal 0.032 vol%	N.D.	+0.1	-0.3	-0.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.3	+0.1	-1.0
phage	JP1 MOI 10	N.D.	-0.4	+0.1	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.1	+0.3	-1.0
carbon source	Carbon source L-Ornithine 5 mM	N.D.	-0.3	-0.3	-0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.4	-0.1	-0.6
soil	soil sample 5; outgrowth in LB	N.D.	+0.3	-0.3	-0.6	+0.2
phage	JP1 MOI 10	N.D.	-0.4	+0.1	+0.4	-0.4
seeds	Growth on radish seeds for 72 hours	N.D.	-0.7	+0.3	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.4	+0.0	-0.3	+0.7
carbon source	Carbon source L-Citrulline 10 mM	N.D.	-0.1	-0.3	-0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.1	-0.2	-0.4	+0.6
carbon source	L-Valine (C)	N.D.	-0.1	-0.3	-0.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	+0.1	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	-0.3	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.3	-0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	-0.3	+0.5	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.2	+0.3	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.2	+0.2	-0.2
soil	soil sample 4; outgrowth in LB	N.D.	+0.5	+0.1	-0.2	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.1	+0.2	-0.1	+0.8
root	root sample 6; outgrowth in LB	N.D.	+0.3	-0.1	-0.2	+0.8
phage	P. simiae ORA MOI 1	N.D.	+0.3	+0.2	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.1	+0.0	+0.9
seeds	Growth on radish seeds for 72 hours	N.D.	-0.6	+1.0	+0.2	+0.5
phage	P. simiae OR Antrim MOI 0.1	N.D.	+0.0	+0.3	+0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.2	+0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.1	+0.2	+0.5
stress	Phosphomycin 0.002 mg/ml	N.D.	+0.2	+0.2	+0.5	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.8	+0.4	-0.2	+0.6