Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05370	PS417_05380	PS417_05385	PS417_05390	PS417_05395
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.6	+0.3	-0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.2	-0.6	-0.2	-0.2
phage	P. simiae OR1 MOI 0.1	-0.8	-0.2	-0.2	+0.2	-0.4
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.2	-0.1	+0.2	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	-0.5	+0.1	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.1	-0.4	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.1	+0.1	-0.3	-0.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.5	-0.3	+0.2	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.3	-0.5	-0.1	-0.3
soil	soil sample 3; outgrowth in LB	-0.6	+0.1	+0.2	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.2	-0.4	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	-0.6	-0.3	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.2	-0.5	+0.5	-0.2
stress	methylglyoxal 0.032 vol%	+0.6	-0.7	-0.3	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.2	-0.7	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.7	-0.0	+0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.0	+0.5	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.0	-0.3	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.0	+0.6	-0.2	+0.1
stress	Gentamicin 0.008 mg/ml	+0.3	-0.6	+0.5	+0.0	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	+0.3	+0.2	+0.1	+0.2
phage	JP1 MOI 10	-0.6	+0.4	+0.3	-0.2	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.4	+1.3	-0.3	-0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.5	+0.1	+0.1	+0.4
phage	P. simiae Grant Run MOI 0.1	-0.5	+0.4	+0.1	+0.3	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.3	+0.0	-0.5	+0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+0.7	+0.3	-0.1	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.4	+0.2	-0.0	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	+0.8	+0.2	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+1.2	+0.6	+0.1	+0.1