Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05350 and PS417_05355 are separated by 11 nucleotidesPS417_05355 and PS417_05360 are separated by 98 nucleotidesPS417_05360 and PS417_05365 are separated by 14 nucleotidesPS417_05365 and PS417_05370 overlap by 4 nucleotides PS417_05350: PS417_05350 - pilus assembly protein, at 1,188,113 to 1,188,592 _05350 PS417_05355: PS417_05355 - exotoxin, at 1,188,604 to 1,189,152 _05355 PS417_05360: PS417_05360 - hypothetical protein, at 1,189,251 to 1,190,216 _05360 PS417_05365: PS417_05365 - FAD-binding protein, at 1,190,231 to 1,190,998 _05365 PS417_05370: PS417_05370 - PadR family transcriptional regulator, at 1,190,995 to 1,191,564 _05370
Group Condition PS417_05350 PS417_05355 PS417_05360 PS417_05365 PS417_05370
solid stress Fraxetin 2 mM; solid stress N.D. -0.1 +0.1 -4.7 -0.3
solid stress Fraxetin 3 mM; solid stress N.D. -0.0 -0.0 -3.4 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.0 -3.3 -0.6
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 +0.2 -3.3 -0.7
liquid stress Fraxetin 3 mM; liquid stress N.D. +0.1 -0.1 -3.6 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 +0.1 -4.3 +0.3
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 +0.1 -3.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.0 -4.3 +0.4
solid stress Fraxetin 2 mM; solid stress N.D. +0.1 -0.0 -3.3 -0.5
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.0 -0.2 -3.1 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 -0.0 -2.8 -0.7
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.0 +0.1 -3.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.1 -3.5 -0.2
liquid stress Fraxetin 2 mM; liquid stress N.D. -0.1 +0.1 -3.1 -0.1
soil soil sample 3; outgrowth in LB N.D. -0.3 -0.1 -2.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.0 -0.0 -2.5 -0.3
solid stress Fraxetin 1 mM; solid stress N.D. +0.1 -0.0 -3.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 +0.1 -3.3 +0.3
liquid stress Fraxetin 2 mM; liquid stress N.D. -0.0 +0.1 -2.8 +0.1
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.0 -0.0 -2.3 -0.2
phage P. simiae ORA MOI 0.1 N.D. -0.1 +0.1 -2.0 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.3 -0.0 -2.2 -0.4
solid stress Fraxetin 2 mM; solid stress N.D. +0.1 +0.1 -2.4 -0.1
solid stress Fraxetin 2 mM; solid stress N.D. -0.0 +0.1 -2.6 +0.2
motility outer cut, LB soft agar motility assay N.D. -0.2 -0.0 -2.1 +0.2
soil soil sample 8; outgrowth in LB N.D. +0.4 -0.1 -2.9 +0.3
stress methylglyoxal 0.032 vol% N.D. -0.4 -0.0 -2.3 +0.6
supernatant control Vogels_fungal_media 0.1X N.D. +0.3 -0.0 -1.9 -0.5
solid stress Fraxetin 1 mM; solid stress N.D. +0.2 +0.2 -2.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.4 +0.2 -1.3 -0.6
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