Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05335 and PS417_05340 are separated by 21 nucleotidesPS417_05340 and PS417_05345 are separated by 10 nucleotidesPS417_05345 and PS417_05350 are separated by 13 nucleotidesPS417_05350 and PS417_05355 are separated by 11 nucleotides PS417_05335: PS417_05335 - molecular chaperone, at 1,186,239 to 1,187,000 _05335 PS417_05340: PS417_05340 - fimbrial protein, at 1,187,022 to 1,187,594 _05340 PS417_05345: PS417_05345 - exotoxin, at 1,187,605 to 1,188,099 _05345 PS417_05350: PS417_05350 - pilus assembly protein, at 1,188,113 to 1,188,592 _05350 PS417_05355: PS417_05355 - exotoxin, at 1,188,604 to 1,189,152 _05355
Group Condition PS417_05335 PS417_05340 PS417_05345 PS417_05350 PS417_05355
stress methylglyoxal 0.032 vol% -0.4 N.D. -0.4 N.D. -0.4
phage P. simiae OR1 MOI 0.1 -0.5 N.D. -1.0 N.D. +0.5
phage P. simiae OR Antrim MOI 0.1 -0.2 N.D. -0.8 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 N.D. -1.1 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 N.D. -1.0 N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. -1.0 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.8 N.D. +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.6 N.D. +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 N.D. -0.7 N.D. +0.5
phage JP1 MOI 10 +0.5 N.D. -1.0 N.D. +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 N.D. -0.6 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 N.D. +0.3 N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. +0.5 N.D. +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 N.D. +0.9 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -0.6 N.D. +0.4
soil soil sample 3; outgrowth in LB -0.4 N.D. +0.9 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.5 N.D. +0.5
lb LB_control -0.1 N.D. +0.8 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. +0.5 N.D. +0.3
liquid stress 80% Methanol 3 mM; liquid stress -0.2 N.D. +0.6 N.D. +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 N.D. +0.7 N.D. -0.3
phage P. simiae ORA MOI 0.1 +0.1 N.D. +0.8 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.1 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. +1.1 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 N.D. +0.4 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 N.D. +0.6 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.4 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 N.D. +0.5 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. +0.5 N.D. +0.9
root root sample 6; outgrowth in LB +0.8 N.D. +0.3 N.D. +0.4
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