Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05330	PS417_05335	PS417_05340	PS417_05345	PS417_05350
phage	P. simiae OR1 MOI 0.1	-0.4	-0.5	N.D.	-1.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.0	N.D.	-1.0	N.D.
phage	P. simiae OR Antrim MOI 0.1	-0.1	-0.2	N.D.	-0.8	N.D.
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	-0.1	N.D.	-0.8	N.D.
stress	methylglyoxal 0.032 vol%	-0.1	-0.4	N.D.	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.1	N.D.	-0.8	N.D.
stress	Tetracycline 0.001 mg/ml	-0.3	-0.3	N.D.	-0.4	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	-0.5	-0.2	N.D.	-0.3	N.D.
solid stress	80% Methanol 3 mM; solid stress	+0.0	-0.2	N.D.	-0.7	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.3	N.D.	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	N.D.	-1.0	N.D.
phage	JP1 MOI 10	-0.1	+0.5	N.D.	-1.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.3	N.D.	-1.1	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.5	N.D.	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	N.D.	-0.6	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.4	N.D.	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	N.D.	-0.5	N.D.
motility	outer cut, LB soft agar motility assay	-0.2	-0.2	N.D.	+0.6	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-0.5	N.D.	+0.9	N.D.
soil	soil sample 3; outgrowth in LB	-0.0	-0.4	N.D.	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.3	N.D.	-0.2	N.D.
solid stress	80% Methanol 2 mM; solid stress	+0.1	-0.1	N.D.	+0.8	N.D.
phage	P. simiae ORA MOI 0.1	-0.2	+0.1	N.D.	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.3	N.D.	+1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.3	N.D.	+0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.3	N.D.	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.0	N.D.	+0.8	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	+0.4	N.D.	+0.6	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.4	N.D.	+0.7	N.D.
root	root sample 6; outgrowth in LB	+0.2	+0.8	N.D.	+0.3	N.D.